HsaEX1035695 @ hg38
Exon Skipping
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr6:7107597-7176773:+
Coord C1 exon
chr6:7107597-7107768
Coord A exon
chr6:7107980-7108060
Coord C2 exon
chr6:7176655-7176773
Length
81 bp
Sequences
Splice sites
3' ss Seq
GATTCCTTTTCCGGAACAAGTTT
3' ss Score
-0.22
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
CGGGATGGCAACTGCGGTCACCCTGCTAAAGTCGGGGCGGGGGCGGCGGTCCTCCCCCTCACCCCCCCCAGTCCGAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCCGCTCAGTAACACGTCCCCAGGAGACTCGCAGGAGCAACACGTGATGTGTCTACTTATCAGG
Seq A exon
TTTGCATCTCTCCTCGGTCTCTCCCTGAAGCCCACCGGTCCCCAACGCATCATGCCAGGGAGCCAAGCGTCCTGCCCGGCC
Seq C2 exon
GTTGCTCCGACTGTGTGTTCCAGGAGTGGTGGCTCTGAGGTGTGACCCTGCCCACGTTTGGGCCCAGCCAGGTTCAGCCCCCCAATAAGGAGGGCAGCTTGATAACACAAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782_MULTIEX1-1/8=C1-5
Average complexity
S*
Mappability confidence:
91%=100=91%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTAACACGTCCCCAGGAGA
R:
TGTGTTATCAAGCTGCCCTCC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains