HsaALTD0005615-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr6:7108031-7176773:+
Coord C1 exon
chr6:7108031-7108060
Coord A exon
NA
Coord C2 exon
chr6:7176655-7176773
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
ACCTTTTCTTATTTTTGTAGGTT
3' ss Score
11.15
Exon sequences
Seq C1 exon
ATGCCAGGGAGCCAAGCGTCCTGCCCGGCC
Seq A exon
NA
Seq C2 exon
GTTGCTCCGACTGTGTGTTCCAGGAGTGGTGGCTCTGAGGTGTGACCCTGCCCACGTTTGGGCCCAGCCAGGTTCAGCCCCCCAATAAGGAGGGCAGCTTGATAACACAAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-1-11,2-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGCCAAGCGTCCTG
R:
GGGCTGAACCTGGCTGGG
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development