RnoALTD0026241-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27602837-27664938:-
Coord C1 exon
chr17:27664888-27664938
Coord A exon
NA
Coord C2 exon
chr17:27602837-27602936
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
ATCTTCTTTTATTTTTTCAGGTT
3' ss Score
11.82
Exon sequences
Seq C1 exon
CCCACCGGTCCCCACCGCATCATGCCTGGGAGCCCAGCACCCTGCCGGGCC
Seq A exon
NA
Seq C2 exon
GTTGTTCCAACTCTGCTCCAGAAGTGGTGGCTTTGAAGTGTGACCCTGCCCACATTTGGGCCCAGTCCTTGTCAGCTTCTCAGTAGAACGAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701-3-5,4-5,5-5-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCACCGCATCATGC
R:
CAGGGTCACACTTCAAAGCCA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]