RnoEX0077191 @ rn6
Exon Skipping
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27602837-27665266:-
Coord C1 exon
chr17:27665180-27665266
Coord A exon
chr17:27664888-27665039
Coord C2 exon
chr17:27602837-27602936
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTATGGGAGAAGAGGAGGAGGGG
3' ss Score
-41.31
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
CTCGTTCTGCCGCGGCTGCTGCGGCAGCTCTGTAACACGTCCCTAGGAGACTCGCAGGAGCAACACGTGATGTGTCTACTTATCAGG
Seq A exon
GGGAAGTGACTGCGGAGTTGATGAACTTTGCACATCCAGAAACGCCATTTTGATTCCTTTTCCGGAACAAGTTTGCATGTCTCCTCGTTCTCAGCCCGAAGCCCACCGGTCCCCACCGCATCATGCCTGGGAGCCCAGCACCCTGCCGGGCC
Seq C2 exon
GTTGTTCCAACTCTGCTCCAGAAGTGGTGGCTTTGAAGTGTGACCCTGCCCACATTTGGGCCCAGTCCTTGTCAGCTTCTCAGTAGAACGAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGCAGCTCTGTAACAC
R:
CTTCGTTCTACTGAGAAGCTGACA
Band lengths:
162-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]