HsaEX6045661 @ hg38
Exon Skipping
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr6:7107799-7181246:+
Coord C1 exon
chr6:7107799-7108060
Coord A exon
chr6:7176655-7176773
Coord C2 exon
chr6:7181124-7181246
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCTTATTTTTGTAGGTT
3' ss Score
11.15
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCGGGCGAGGAAGCTGGGCGGGGGGCCGAGACGGGGGCCGGGACGACGGCTGGGGCGCCGGGGTCGCCAGCTCCTCGCCCACCTCCCTCCCTGTGGGAGAAGAGGAGGAGGGGAAGTGACTGCGGAGTTGATGAACTTTGCACATCCAGAAACGCCATTTTGATTCCTTTTCCGGAACAAGTTTGCATCTCTCCTCGGTCTCTCCCTGAAGCCCACCGGTCCCCAACGCATCATGCCAGGGAGCCAAGCGTCCTGCCCGGCC
Seq A exon
GTTGCTCCGACTGTGTGTTCCAGGAGTGGTGGCTCTGAGGTGTGACCCTGCCCACGTTTGGGCCCAGCCAGGTTCAGCCCCCCAATAAGGAGGGCAGCTTGATAACACAAAGAAAACAG
Seq C2 exon
TGTCAACGAGTACTACCAAGAGAAGAAGACAAGAGGTCAACACAGACTCATTTTCTACTCCGTGTGAATGATAGCTACAGCAGGGGAAAGTTTCATAGTCTATCAGTGGGTCAGAAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-'1-12,'1-11,24-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGGGGAAGTGACTG
R:
TGAAACTTTCCCCTGCTGTAGC
Band lengths:
256-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains