RnoEX0077188 @ rn6
Exon Skipping
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27599122-27665039:-
Coord C1 exon
chr17:27664888-27665039
Coord A exon
chr17:27602837-27602936
Coord C2 exon
chr17:27599122-27599228
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTTTTATTTTTTCAGGTT
3' ss Score
11.82
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGGAAGTGACTGCGGAGTTGATGAACTTTGCACATCCAGAAACGCCATTTTGATTCCTTTTCCGGAACAAGTTTGCATGTCTCCTCGTTCTCAGCCCGAAGCCCACCGGTCCCCACCGCATCATGCCTGGGAGCCCAGCACCCTGCCGGGCC
Seq A exon
GTTGTTCCAACTCTGCTCCAGAAGTGGTGGCTTTGAAGTGTGACCCTGCCCACATTTGGGCCCAGTCCTTGTCAGCTTCTCAGTAGAACGAAGAAAACAG
Seq C2 exon
TGTAAAGGAGTGGTACCGAGGGAAGCACAGGGCTCAGTAGAGCCATTTCCTACCCCATGTGGATGACAGCCGCAGCAAGGGACTATCACTTGGGGCAGAAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701-'3-8,'3-5,13-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGACTGCGGAGTTGAT
R:
TGCCCCAAGTGATAGTCCCTT
Band lengths:
248-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]