MmuEX6057949 @ mm10
Exon Skipping
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37825975-37892658:+
Coord C1 exon
chr13:37825975-37826052
Coord A exon
chr13:37888871-37888972
Coord C2 exon
chr13:37892552-37892658
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTTTTAATTTTTCAGGTT
3' ss Score
11.66
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCGCGGCTGCTGCGGCAGCTCTGTAACACGTCCCCAGGAGACTCGCAGGAGCAACACGTGATGTGTCTACTTATCAGG
Seq A exon
GTTGTTGCAATCCTGTGCTCCAGAAGTGGTGGCTTTGAGGTGTGACCCTGCCCACATTTGGGCCCAGTCCTCACCAGCTCCTCGGCAGAACGAAGAAAACAG
Seq C2 exon
CATAAAGGAGTGATATCCAGAGAATAAAAGGGCTCCCCAGAGTCATTTCCTACTCCATGTGGATGACAGCAGGAGCAAGGGACTATCATTTGGGGCAGAAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087-'2-23,'2-13,8-23=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCTGTAACACGTCCC
R:
CTCCATTTTCTGCCCCAAATGA
Band lengths:
171-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types