GgaEX0019350 @ galGal3
Exon Skipping
Gene
ENSGALG00000012799 | RREB1
Description
NA
Coordinates
chr2:65898145-65954776:-
Coord C1 exon
chr2:65954587-65954776
Coord A exon
chr2:65902402-65902527
Coord C2 exon
chr2:65898145-65898264
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCCTTTCCCCATAGGCT
3' ss Score
13.17
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAGATCATCCCCCCCTCCCGCTGCAAAGTTTATTTTTAACCAGCCAGCGCCGCAATTGGGATGGGGCTGCGAGGAAGCCACCTCTCGTAGCCCGGCGCCGGCAGCCCCCGGCCCGCAGCCCTTTAACTTCTCCCCGGGGCCCGCCCGGAGGCCGCAGCGAGGAGGCCGGGATGCAGGCGGCCCTCCGCAG
Seq A exon
GCTGCTCTGTACTGGTGCTCCAGCAGTGGTGACAGTGAGGTGATGCTGCCAGTATATTTCTCTACCGCTGGGGTGCCGAGTCAGCACCAACACTTCAGTAGCAAGGGCACAGTTGATATTAAAAAG
Seq C2 exon
TGCTAGAGGGTGCTACTGAAGAAGAGGCTGAAGAGCCTGATGCTACAAAACCTACTACACTAAGTGAGGAGACCAGCAAGCAAGAAGAGAGCCTCAGTCAATCAGGGGATAGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799-'0-4,'0-2,4-4
Average complexity
C1
Mappability confidence:
89%=75=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCGCTGCAAAGTTTAT
R:
TGCTGGTCTCCTCACTTAGTGT
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]