MmuEX1023187 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157551007-157552756:+
Coord C1 exon
chr1:157551007-157551124
Coord A exon
chr1:157551476-157551573
Coord C2 exon
chr1:157552019-157552756
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTTCACTTTCTACTTACAGGTG
3' ss Score
11.33
5' ss Seq
TTGGTAGCT
5' ss Score
-0.7
Exon sequences
Seq C1 exon
GTTTGTGGAGACAAACAGTGGGGAGACTGGCGGCCCCACTTGGCTGTGATCCTGTCAAATCAGGCTGGAGATACAGAGTTGTACCAGCGAGCGATTGTCAGCATGGGGGATACCCTGG
Seq A exon
GTGAGGTGCCTTTACCTTGAGCTAACACAGGGGCGTGCCACTTCCTCTTGCCTCGGGGACTTCAGATGGGAAATGCTGCTTTTGCCTAAACCACCTTG
Seq C2 exon
ATCCTAGCCCAGAGGATAGTGCCTCCCACACTCCAAATGAGTCCTCCCGATTCAGTTAAACCTTTCTGGAAGCACCCTGAAGGTCACACCCAGAGGTATTTCCTAAGATAGTCTATTCAAGTTGACAATGAAGATTGACTGTCACACCCACTTAATTCGAGTTTAAAGTAGTAGAAAATGTTTGGAGAACATTTAAAAGTCAGGAACAACTTGGTAATTGATGTGATTTTTTATGAGCACAGGAAAAGTCTTCAATCATCCAACTTCAGTAGAGGAAGCAGCCACACCCCACAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGGAAGCAGCCACACCCCACAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'24-30,'24-29,25-30
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.344
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(15.9=100)
A:
PF129312=Sec16_C=PD(2.6=42.9)
C2:
PF129312=Sec16_C=PD(8.2=50.0)
Main Inclusion Isoform:
ENSMUST00000086130fB16377
Main Skipping Isoform:
ENSMUST00000086130fB3610
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTGGCTGTGATCCTGTC
R:
ACCTCTGGGTGTGACCTTCAG
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types