DreEX0064778 @ danRer10
Exon Skipping
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23800691-23801670:-
Coord C1 exon
chr6:23801326-23801670
Coord A exon
chr6:23800946-23800971
Coord C2 exon
chr6:23800691-23800783
Length
26 bp
Sequences
Splice sites
3' ss Seq
ACATGTATTTATTTTTTAAGGTG
3' ss Score
8.67
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
ATTTTACAGAAGGCCAGGCAGAGGCTATTAACAACCCTAGCACTGAAACTGAATCCTCAAACCCACCCTATTCTGCAATACCACATACTGATGCTCAGTTTGAGGGAACTTACTCTTTAATGAGCCACTCATACTCTTCTGAAGAACAGGCTCCTAGAACTATTGCCCCAGTGCCACTGTACCCGAGCCAGCAGCCCATGACACTACCTCCAGTCACCCCTACTGAAATGTTTGGACCTCCATCTGTTTCAGTGGAGCAAAGCTATGCTAATGATAGCAGCACTTACCATGATGACTTGCACAATGCTATGTCCAGTTCAAGTCCAAGAAACTACACTGATACAG
Seq A exon
GTGGTGACTTTTCTGCTGAGGCACTG
Seq C2 exon
ATTGCTAGTGAAAATGATGCCACAGTTGGAAAGGTTAATCAGTTAGGGACATTTCCAAGCGAGGACAACAAGACCAAAACACAATCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554-'23-26,'23-25,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.948 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGATGACTTGCACAATGC
R:
GTCCTCGCTTGGAAATGTCCC
Band lengths:
126-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]