BtaEX0031732 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60783179-60786615:-
Coord C1 exon
chr16:60786471-60786615
Coord A exon
chr16:60783783-60783904
Coord C2 exon
chr16:60783179-60783446
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTGCCATGGCTAGGAT
3' ss Score
7.05
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTATCACTGATGGAGGAGTCCAACCTTCTCTGGCAGCATGAGTCTGGTCTCACCTCCAGCAGCTACGAGCTCAGTCAGTACATGGCAGATGCTTCCGAGCTCTGTGACCCCATGACTTCAGCCGTTTGGAGCCCAGTTCAGGCTG
Seq A exon
GATTTCTAAAACTACGTTGAATGATAGTGATGACTGCAGGCATCCTAGTCTTGTTCCTGATCTTAGAGGAAATGCTTTCAGTTTTTCATCATTGAGAATGATATTTGCTGTGGGTTTGTCAG
Seq C2 exon
AACCTTATCTTGGTCCCAGTTGAAATTTGCGAAGAAATATGTCTGTGGAATATTTCTTACATAAAGCAAAGCAGTGGTTGTAATGCTAACAGTGTCCACCTGTATTGGTTGGTCAGAGGACATCTCAGCAGCTGGTCCCAAGGAACCCATGAAGTTCTATGTCCCTCACATGCCTGTGAGTTTTGGGCCAGGAGGTCAGCTGGTGTGTGTGAGTCCCAGCTCTCCCAGTGATGGACAGACAGCCCTTGTTGAACTGCACAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'9-10,'9-9,10-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129322=Sec16=PU(33.3=66.7)
Main Inclusion Isoform:
ENSBTAT00000001137fB6202
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACTTCAGCCGTTTGGA
R:
GACTCACACACACCAGCTGAC
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development