MmuEX1027608 @ mm10
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109664304-109682957:+
Coord C1 exon
chr3:109664304-109664433
Coord A exon
chr3:109680686-109680769
Coord C2 exon
chr3:109682806-109682957
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCCTTCTCTAAGCCC
3' ss Score
7.09
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAACTTGTGGAGTACTACAAGCACCATTCTCTCAAAGAAGGGTTCAGGACCTTAGATACAACGCTACAGTTTCCATACAAGGAGCCAGAACAGCCAGCTGGACAGAGGGGTAATAGAACAGGCAACAGCT
Seq A exon
CCCCTCCTCTGTTCTGTGGCTTTTCTTTTGTCACTCCTCCAGACTACAGCTTTGTTCCCCCTTCTTCCACTCCTTTCTGGTCAG
Seq C2 exon
TGTTGAGTCCCAAAGTACTGGGTATTGCCATCGCTCGGTACGACTTCTGTGCAAGAGATATGCGGGAGCTCTCCCTATTGAAAGGAGACATGGTGAAGATTTACACGAAGATGAGTGCAAATGGCTGGTGGAGAGGTGAAGTAAATGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.4)
A:
NO
C2:
PF0765312=SH3_2=PU(75.9=80.4)
Main Inclusion Isoform:
ENSMUST00000046864fB19285
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGGACAGAGGGGTAAT
R:
TACTTCACCTCTCCACCAGCC
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types