GgaEX0002325 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:991005-1001429:-
Coord C1 exon
chr8:1001300-1001429
Coord A exon
chr8:996356-996439
Coord C2 exon
chr8:991005-991156
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTCTTTCTCTAAGCCC
3' ss Score
7.37
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAACTTGTAGATTACTATAAGCACCACTCTCTCAAAGAAGGCTTTCGAAGTCTGGATACTACACTTCAATTTCCGTACAAAGAATCTGAAAACTCGGTGGGACAGAGGGGAAACAGAGCAGGTGGCAACT
Seq A exon
CCCCCTCTTTGTTCTGTGGGTTTTCTTTTGTAACTCCTCCAGACTTCAGCTTTGTTCCCCCTTCCTCCACTCCTTTCTGGTCAG
Seq C2 exon
TGCTAAGTCCAAAGGTGATAGGCATTGCCATTGCAAGGTATGACTTCTGTGCAAGAGACATGAGAGAACTGTCCTTACTGAAAGGTGACGTTGTAAAAATTTATACAAAGATGAGTGCAAATGGCTGGTGGAGAGGTGAAGTAAACGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-24/26=23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.4)
A:
NO
C2:
PF0765312=SH3_2=PU(75.9=80.4)
Main Inclusion Isoform:
ENSGALT00000044918fB253
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGAGGGGAAACAGAG
R:
TACTTCACCTCTCCACCAGCC
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]