DreEX0084182 @ danRer10
Exon Skipping
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16332062-16349411:-
Coord C1 exon
chr2:16349303-16349411
Coord A exon
chr2:16334199-16334279
Coord C2 exon
chr2:16332062-16332210
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCCTCGGCTTGGATCCTAAGCTC
3' ss Score
1.39
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGCTTGTTGAATATTACAAACAGCACTCTCTGAAAGAGGGTTTCCGTACTCTGGACACTACTCTGCAGGTTCCCTTTAAGGAACTTGGTACAGGACTCCGTACTGCTG
Seq A exon
CTCCAGTGCTGTGTGGGCTTTCCGTTTTGAGTCCCACCAGCTACAATTTTGTTCCTCCCTCCCCCTCACCCTTCTGGTCAG
Seq C2 exon
TTTTGACCCCAAGAGTGCTTGGTATTGCGCTGGCGCGATATGACTTCAGCTCGAGGGACACCCGTGAACTCTCACTGCAGGTGGGCGACCTGGTGAAGATCTATATCAAGTGTACCAATGGATGGTGGAAGGGTGAAGTCAATGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=13.5)
A:
NO
C2:
PF0765312=SH3_2=PU(74.5=76.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTTCCGTACTCTGGACA
R:
TAGATCTTCACCAGGTCGCCC
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]