RnoEX0097893 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212564620-212583077:+
Coord C1 exon
chr2:212564620-212564749
Coord A exon
chr2:212580827-212580910
Coord C2 exon
chr2:212582926-212583077
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCCTTCTCTAAGCCC
3' ss Score
7.09
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAACTTGTGGAGTACTACAAGCACCATTCTCTTAAAGAAGGGTTCAGGACCTTAGATACGACGCTACAGTTTCCATACAAGGAGCCTGAACACGCATCTGGACAGAGGGGTAATAGAACAGGCAACAGCT
Seq A exon
CCCCTCCTCTGTTCTGTGGCTTTTCTTTTGTAACTCCTCCAGACTACAGCTTTGTCCCCCCTTCTTCCACTCCTTTCTGGTCAG
Seq C2 exon
TGCTAAGTCCCAAAGTTCTGGGCATTGCCATCGCTCGGTATGACTTCTGTGCAAGAGATATGCGGGAGCTCTCCCTATTGAAAGGAGACATGGTGAAGATTTACACAAAGATGAGTGCAAATGGCTGGTGGAGAGGAGAAGTAAATGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.4)
A:
NO
C2:
PF0765312=SH3_2=PU(75.9=80.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACGCATCTGGACAGAGG
R:
TCTCCTCTCCACCAGCCATTT
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]