MmuEX1027994 @ mm10
Exon Skipping
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73439977-73447937:-
Coord C1 exon
chr2:73447849-73447937
Coord A exon
chr2:73444445-73444574
Coord C2 exon
chr2:73439977-73440156
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCCATGTGGTTGCCTTTCAGGCT
3' ss Score
8.8
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTACCTTCAAGACTGCTGAAATTTTAACTACCCAAGATGCCTGTCCCTCCCCCACCAGCACCCCCACCGCCACCAACATTTGCACTC
Seq A exon
GCTAACACTGAGAAGCCCACCTTGAACAAGACAGAGCAGGCTGGGAGGAATGCTCTTCTCTCTGACATCAGCAAAGGGAAGAAGCTAAAGAAGACGGTCACCAATGACAGAAGTGCCCCAATATTGGACA
Seq C2 exon
AACCAAAGGGAGCCGGCGCCAGTGCTGGTGGCTATGGTGGAGGCGGCGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGCAGCGGTGGAAATTTTGGAGGGGGTGGTCCTCCAGGACTGGGAGGACTATTCCAGGCTGGAATGCCGAAGCTGAGGTCCACCGCCAACAGGGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284-'10-16,'10-13,14-16
Average complexity
S
Mappability confidence:
90%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PU(28.1=94.1)
A:
PF0121314=CAP_N=PD(69.0=90.9),PF0220515=WH2=WD(100=61.4),PF071726=GRP=PU(35.5=61.4)
C2:
PF071726=GRP=PD(63.2=78.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACCCAAGATGCCTGTCC
R:
CATTATCCCTGTTGGCGGTGG
Band lengths:
242-372
Functional annotations
There are 1 annotated functions for this event
PMID: 16275905
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: isothermal titration calorimetry, sequence based prediction, structure based prediction, x-ray crystallography. ELM ID: ELMI001659; ELM sequence: RNALLSDISKGKKLKKT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types