BtaEX6008961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001585 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:22266507-22275718:+
Coord C1 exon
chr2:22266507-22266594
Coord A exon
chr2:22269738-22269867
Coord C2 exon
chr2:22275545-22275718
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTGCATGGTTTCCTTTCAGGCC
3' ss Score
9.64
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTGTCAGCCAGACTGTTGAAAGCTAACTGTTCAAGATGCCTGTCCCGCCCCCTCCAGCGCCCCCGCCGCCGCCCACGTTTGCTCTG
Seq A exon
GCCAATACAGAAAAGCCTTCCTTGAGTAAGTCAGAGCAGGCTGGGAGAAATGCTCTGCTCTCTGACATCAGCAAAGGGAAGAAACTAAAGAAGACAGTCACCAATGACAGAAGTGCACCAATATTGGACA
Seq C2 exon
AACCCAAAGGAGCTGCTGCTGGCGGCGGCGGTGGTGGTGGTGGCGGCGGCAGCTATGCTGGAGGTGGCGGAGGAGGAGGTGGTGGAAATTTTGGCGGAGGTGGACCACCCGGTTTGGGAGGACTGTTCCAGGCTGGAATGCCGAAGCTGAGATCCACAGCCAACAGGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001585-'3-6,'3-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PU(28.1=94.1)
A:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGACTGTTGAAAGCTA
R:
CATTCTCCCTGTTGGCTGTGG
Band lengths:
256-386
Functional annotations
There are 1 annotated functions for this event
PMID: 16275905
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: isothermal titration calorimetry, sequence based prediction, structure based prediction, x-ray crystallography. ELM ID: ELMI001659; ELM sequence: RNALLSDISKGKKLKKT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]