DreEX0085311 @ danRer10
Exon Skipping
Gene
ENSDARG00000071084 | wipf1b
Description
WAS/WASL interacting protein family, member 1b [Source:ZFIN;Acc:ZDB-GENE-110815-1]
Coordinates
chr6:10554545-10556488:-
Coord C1 exon
chr6:10556403-10556488
Coord A exon
chr6:10555099-10555228
Coord C2 exon
chr6:10554545-10554697
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTGCTTGTATTTGCTTACAGGCC
3' ss Score
8.98
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GTTTCAGTGAGAGGAGGTGACGCCCAGGAGAAGAAATGCCGATACCTCCTCCCCCTCCCCCTCCCCCGCCCCCCACCTTCTCACAG
Seq A exon
GCCAACACAGAGAAGCCTGTCTTGAACAGATCAGAGCAGCAGGGCAGGAATGCTTTACTGTCAGACATCAGTAAAGGAGCCAGGCTGAAGAAGGCTGTTACAAATGACCGCAGTGCCCCCGTACTTGACA
Seq C2 exon
AACCCAAAGGTGGAGGAGGGCCTGGAGGGGGAGGCGGGGGCGGAGGAGGAGGAGGAGGGTTTGGTGGTGGTGGTGGTGGGGGTGGAGGAGGCGGAGGAGGTCTGGGTGGGCTCTTCCAGGGTGGCATGCCAAAGCTGCGCTCCACTCGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071084-'3-7,'3-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PU(28.1=94.1)
A:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGAGAGGAGGTGACGC
R:
CATCTCGAGTGGAGCGCAG
Band lengths:
237-367
Functional annotations
There are 1 annotated functions for this event
PMID: 16275905
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: isothermal titration calorimetry, sequence based prediction, structure based prediction, x-ray crystallography. ELM ID: ELMI001659; ELM sequence: RNALLSDISKGKKLKKT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]