GgaEX1064196 @ galGal4
Exon Skipping
Gene
ENSGALG00000009321 | WIPF1
Description
WAS/WASL-interacting protein family member 1 [Source:RefSeq peptide;Acc:NP_001012935]
Coordinates
chr7:16348838-16352686:+
Coord C1 exon
chr7:16348838-16348926
Coord A exon
chr7:16350228-16350357
Coord C2 exon
chr7:16352534-16352686
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTTTAATTTTATTTTGCAGGCA
3' ss Score
10.98
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTCTTAGCAAGATCAGCTGGAGCTCAGCCTTCCACCATGCCTGTGCCTCCCCCGCCAGCGCCCCCGCCGCCCCCAACGCTGGCCTTG
Seq A exon
GCAAATACTGAAAAACCAACTCTAAGCAGGTCAGAACAGGCAGGGCGAAATGCTCTATTATCTGATATCACCAAAGGAAAAAAGCTAAAGAAGACTGTTACTAATGACAGAAGTGCTCCAATTCTAGACA
Seq C2 exon
AACCCAAAGGAAGCAGCGGATGTGGCGGTGGCTTTGGAGGAGGTGGCGGTGGCAGCAGTGGTGGCGGCTTCAGTGGTGGTGGGCCACCTGGCCTTGGAGGCCTTTTTCAAGCAGGAATGCCAAAGCTCAGATCTGCTGCGAGTCGAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321-'9-7,'9-5,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PU(28.1=94.1)
A:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTTAGCAAGATCAGCTGGAGC
R:
CAGCATCTCGACTCGCAGC
Band lengths:
242-372
Functional annotations
There are 1 annotated functions for this event
PMID: 16275905
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: isothermal titration calorimetry, sequence based prediction, structure based prediction, x-ray crystallography. ELM ID: ELMI001659; ELM sequence: RNALLSDISKGKKLKKT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]