GgaINT0047292 @ galGal4
Intron Retention
Gene
ENSGALG00000009321 | WIPF1
Description
WAS/WASL-interacting protein family member 1 [Source:RefSeq peptide;Acc:NP_001012935]
Coordinates
chr7:16350228-16352686:+
Coord C1 exon
chr7:16350228-16350357
Coord A exon
chr7:16350358-16352533
Coord C2 exon
chr7:16352534-16352686
Length
2176 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
AGGGACTTTTTTTCCAACAGAAC
3' ss Score
7.69
Exon sequences
Seq C1 exon
GCAAATACTGAAAAACCAACTCTAAGCAGGTCAGAACAGGCAGGGCGAAATGCTCTATTATCTGATATCACCAAAGGAAAAAAGCTAAAGAAGACTGTTACTAATGACAGAAGTGCTCCAATTCTAGACA
Seq A exon
GTAAGTATGATTCTGCATGGCTGAGTTTGTGTACTTGAATGGTTCTATATATCTGAATGCAGAAAATTGTTTATCTCTTATCGGATGAGCTGCCATGGGAAATGCAGGTAAAACAAAATGCCCAGAGCTGGTATATACAAAAATAAATTCTGTTCTTTGTGGATTAAGTAAGCTGAGAAATCAAGTACTGCTTATGAAATGTGGGCATCAGTGTGCTTGCTTACTCTCATAAAGCAATTCATTTTCTCATTTGCTTAAACCAGAACACCATGGAAACCCTACTAGGGGACCTGCTGAGAAGCTACAGTGGCTCAGGCAGAGAAACTCCCTTCAGTACTGAGGACAGCGGGGAGAAGAAAGTGCACAAAAATAAGGGCAGCCGTGGCATGGCACCATTGGCTTATTAATGGACCCATAGCGCTGGAAGCAGTCGGAGCCACAGCCCAAGCCGGGTGCTGCTGTGCTGCACGTAGACTGGCTGCTGCTAGAGCGACTCAGGGGTGTTATCTTTTCGGCTGAGCCTCGTTGCTCAGCTTGCCAGGCAGTGCTCTGGCACAGCGCAGCAGCTGAGCCTGCCTGTGAGGAGGAAAGGAGGTCTCCATCCGCTCCTGGCTCTTGCTGCGCACCATGGTGTGTGCTGAGAGAAAGCTGGAAAAGCCCCCGTAGCAATAATCAGGAAGAGAGAACAGAAACGGGAGGTAGGCAAGGAACAAAGGCCTGCTGTGGCGGTGGCATAGCATTTATTGCCTAGGGAGAGAAGTGATTTCTACAGACAGATTAACAAATGTGATACAACTTGGTCTGGGTCTGGCCGTGCAATTAAAGGCTGGACTGTGATGGGAAGGTGATGAGGAAAGAAGGAAACACCAACAGACGTGTGACCAAATAGGAATTTAGAAAAAGAAATAGGTACAGTCTATCATCAGCCAGATACCTCGCTTTAAACACTTGAATATCGTCTCTGAATGCCAAGTTACATGTTCTAGCTATTCTAATGAGCTGGAGAACAGAAGTTAAGGGGTTTAAAGGAAGGCTAAACAGTAAGATTCAAATGATGTGGCTTATTATCTTGTTTACGTGAATTAACATATCATGAAGAAAGACTAAAACATAGTTAGAAGCATTTCTCCAGAGGTTCACACCCTGTGTGAGTCAGAGCTGAACTGAGCTAACATGCTTAAGAACAGAGGGATGATGTGAAACATTCCCCCATGAACACATTCTTCCTCCTTTTTTCTGGGTGGGATTATTAGAAGTGCTTTTCATCTACAGCTTTTAATTACTTTACAGTCAATGAAACTTTTACCCACCCAAAGTTGTGGAAATCAAGAGGCCAAGAAATTAAGCAATTGGTCCTCAGCCACGTAGCCTGTCATCGGGGAGCTGATCTTCACAGATATCTCAACCTGTGGGCCTGATCCTTTTACAGTGATGTTCTAAGGAGGGTTCTTCCCTGTATTTATCACTGAAAATGCTTTCATTGTACTGTCAGTGCCTTGATGCTGTCATGGCAGAAGTGTTGAGGAAAGGCACCAATGGTGCCAGTGGTGGGAAATGTTAGAGAAAATCAGGAGAGGAAATGGAGACTGATAACATAGTTCCTCTACATTGGAATAAAATGGCAGCTAATGATCATCTCACTGCATTTCTGGGCGTACAGAAAAGTCATCAGAAATAAAATCTCTTCCATGCATTCACCAGAGGTGCCCCCAAGGGGAAGAACACCTCTGTCTTCCACCCTCATTCCTCATTTTCCTCATTTGCTGTCCTTGGCTTATGGAGAAATGAAGGTGAAGGATAAGAGAGCAATGGTATGAAGAATTGGAAAGCAACTACACAGTCGTTAACAAAGACAACGTGATATTCTCAGAGGTTCCATCCATTTTGCAGTTCCAGATTCTCCAGAGTGACTGTTTCTCTGCTTTCCAGTCCAGAGCAGCCAAAAGGAAAGTGATGGCTTAATAAAACTCAATAGCTACGTCTATTGCTCCACCTCTTCTGTGGCACAATAGCGGTAGTGGTGGCTGTGACGATCCAGCCTGAACAAAGCCTTGCTAACGTGTTTTGAAAGCTTGTCCTATTTTCCCCGCTTACAAGCGTTGCTGTAATGAAAGAGAATACTTTGCAGGATCAGCCTCACTTCTCTGCATAACATGAGGGACTTTTTTTCCAACAG
Seq C2 exon
AACCCAAAGGAAGCAGCGGATGTGGCGGTGGCTTTGGAGGAGGTGGCGGTGGCAGCAGTGGTGGCGGCTTCAGTGGTGGTGGGCCACCTGGCCTTGGAGGCCTTTTTCAAGCAGGAATGCCAAAGCTCAGATCTGCTGCGAGTCGAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321:ENSGALT00000038663:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]