MmuINT0176094 @ mm10
Intron Retention
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73439977-73444574:-
Coord C1 exon
chr2:73444445-73444574
Coord A exon
chr2:73440157-73444444
Coord C2 exon
chr2:73439977-73440156
Length
4288 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CATCTTCCCTTCATCTGCAGAAC
3' ss Score
11.24
Exon sequences
Seq C1 exon
GCTAACACTGAGAAGCCCACCTTGAACAAGACAGAGCAGGCTGGGAGGAATGCTCTTCTCTCTGACATCAGCAAAGGGAAGAAGCTAAAGAAGACGGTCACCAATGACAGAAGTGCCCCAATATTGGACA
Seq A exon
GTAAGTAGAAACCCCTTTTCCATAGTCTAAATGGTTTATAGCTTAATTGTCAACCTATGCCTTGGACCAGATCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCAGCTGCAGAGCTAGCGAAAGGCAGAACTGAGTTAGTCATTGTAGCCACAGCTTTAGCTTGAGCCCCCTCTAATGCCGCAGGAAGCCAGCATAATAATTCTTTGTCCAAGAAACACACAGCAGCGATTCTCTGAATTATTCACAGCGCCTTCTGGAGATTAACCCATTGCTCTTGGCGTCCGAGACCGAGACCATGAGGCAGCATGAAACATGGGAAGTGTCCTGGCCTTGGAATCAGGAGTCAGGGCTCGGCACACAACTTCACCAGGCCACAACTTCAAGCCTTAATGTCTTAATTTGTAAAGTGGAGACGGGTACCGCTCTGCTGGCCACACGAGTCTGTTGTGAGCTCCCAATGAGATGATGTGTGTACAACGCTCTTGTCTGCTAAGAGGAATTCTAGAGAAAGATGTGATTCCTGGGAGCTTGAAGACAGGAAACGAGATCACAAGTTTGTTTATCTGTACATATGAGTCTGAGAAGCCTCCTGCAGTAACACAGGATCTCTATAAACAAGCAAGTAGGCACAATGTAAGCTTCCTCGTCGGCATTTATGAAGTGAAAAAGTCCTTGATTGGATCCACATCTTGACACCGTCCTTTCTGTCTCACCAGATTTATCATAGCCTCAGCTCTCATTTAGACTCAGGAAATGGGATGACATGACAGTCACCAAACACAGCTCCGCAGGCAGGTGAATAAACATTCAGGATTTAGGAAGCTTCGAGGTAGGTAGGAGATCACTGGGGGAATGAAGCTAACAGGTAGAGAAGGAAGAAGTGGCAGGGGCTGGGGGAGTCAGAGTTGGAAGAGAAATGTCAGGTGCATATGGGAATGAATGCACAGCACTCGGAGAGGAACTGTGGGTTCTCAGTACGTGACTAGCAGTCTGATCTCTAGATCAGAACACCACACAGTATTTCTGTCTGGGTTCTGTCTGGGAAGCTTTGGTTCAACAACCATATCTGAACTGTGATCTCTGCTGTTGACTAGCGAAGCTACCAAGTCTCAGAGAGAGGATGCCTGCTCTCTTTACTATAAGAATCCGGAGCCCTGGCGGAGTGAGTGGCAAGATCCTTGCCAACTTTGAAGGAAACTAGACAGTCTGGGCTTCCTGACTCTCTAGTGGAAACTCCTCAGAGTCTTCCAGGCCCATCTTCCATTGTGTGGAAATAATGCTAGCCTTTCCTCTCCAGCAGCTCAGTGGTGCTGAGGAGTGAGTATCTGTCAGAAGCAAAATGTAATCCACTGTATGCTTGGTTGCCCTGTGCTGAACTGGATACCTATACTGCTGTCCAGGCTCTTGCAAATAACAGAATTCAGCCTGTTTTGAATTTGATGGCAGGCAAAACCTCCCTAGGTGCTCTATCAAAGGCTTATGAACGATAGCTTTATAACTTAGCCCTGTCCTGCTGTATATACCAAATGACCTAAAGCCAGTCAGCTATCCTCAATTTCAGTTGTTTTCTCTTAGTCTGTTTTCTTTTTTTTGTTTGTTTTAATTTTTTTAAGATTTATTTTTTTATGCAGATGAGTACACTGTCACTGTCTTCAGACACACCAAAAGAGGGCATCAGATCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAGGACCTCTGGAAGAGCGGTCAGTGCTCTTAACCTCTGAGCCATCTCTCTAGCCCCCATTTTCTATTACTATAACAAAATACCTGATACGAAGTATTTGATGAAGAAAGGAAACTTATTTAATATATAGTTTAGAGGTTTGAGAGTATGCCATTGGAATTGGCCTGGCTCTGATCAGGATCTCATGGGGATGGTGTCACAACAATGTCAGAAGTCAAGGCATAAGGCAGACCATAAAGCAAGACAGAAACCCTGATTGGGGAGCAAACAGTCTTGCTGTTTTTTGATAACCCTTTTCAGAACTAACTAGAGTCCTGTGAAACCATAGTAGCTCCTTCTGAGGGTAGTAGCCAACCCCTTCAATGGCCTCATTATTTCCCACCAGTTCCTGTTTCCTAAAGGTTACACACCCTCTCTCATGGACACACTGAGGACCAGGTTTCTCACATGGGAGCCTTGAAGGCTATTTAAACCATATAGCACTTCCCTATATGAACAATGGGTGGCGCTCCAGGGAGACAATGCTGATAGATGTGTCTGATAGTACAGCACACATAAATGTGTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTTCTGTCTTATTCAGCAATGACTAATACTTGAATGGCGAGGACAATGTTATACCACTGATAGTTAAAAGTTAGTGAAATTTTAAACCTCATAGTAAAGCAGTGTCACAAACACTCCTGAAATTGTTGCTGTGTTTGGGTTTAGCGTGTTAGGTAAAATAATCCTTACCAATTCTTCACCAAGCTACATCTTCAGCGGAGAGCTGTACATGTAAGGAAGATGGAGAACTAATGGCTAATTTAGAAAAACACATTAATGAATAAAATGAAATCTCCCAAAGTCGATAAAGAGATTTGAGATGGATTTTGAGTTGGGGATAGAATAATGAAGCCCCGTGCGGAGCCAGCTTCAGATGGCTCCTTCTGTGAGTGATGAGATTACAGGTGTGCTTCACGGTGCTTGGCTCATTTTAAAATCCTGAAGTTAATTTCCTAGGAAATCATTAATTTGTCAGACTTTACTCTGGAAGCCTGTATAAGCAAGGAAAAAGACAGAAGCTTTCCAAGATTAGTTTCTCTCTGAAAAACTTCACATTTAAAAGGTTTTTATTGGTAAGTTCTGTGTTTCCGTCTTCAATGAACAGCTAATTCAAATGCTGTATGAATCTTTCCCAAGCTGGAAAAAAGAAAGCTTTTTTGTAGGTGTCATGAAACTGCCACCGTCCTAATACCAGAATGTCGCCCAGGCAGTGCACACACAAGTGATATACAGACCAGTGCTTTCTACCTGGGAATGATCCTGCTTCCCAGAGGACCTGTGGTGATGTCTCCAGATGGTCTTCTGAGCGTTTTGTTTCTTCTTTCTTGTTTTCACTTTGTCGTGGGAATGAAAGCCACAATCAAGAGCGTGTTAGGCAAGCGCTCTGCTGCTGAGCTACCTGCCAAGCCTGGATGACACTCTTAGCCCTCTCTACCTGGGTAGAGATGGGAGGCTTCTAGTGGGCAGGGTCAGAGACACTGTAAACATTCTAATCAAGGGCAGGACAGCCACCCAAACTGTCAGCAAGGAGTTCCAGAAATAAGAAAATGACACATGGGCTGGAGAGACGGCTCAGTGGTTGAGAGCACAGGCTGTCTCTTCTTCCAGAGGTCCTGAATTCAACTCCCAGCAACCACATGGTGGCTCACAACCATTTGTAATGGGATCCGTTGCCTCTTCTGATGTGTCTGAAGACAGCTACAGTATACTCATATAGATAAAATAAATAAATACATCTTTAAAAATAAGAAAGAAAATGACATATACCATTAATGATAAGAAAACACTAAGCAAAAAGAGTAGTAAGAGTAATTGACCAAGACCAAAAATAATCCCATTTTTAATACTAGATTTAAAATCTATACTAAATATCAAACAATAAAAATTATATAATCAGCTAAGTAAATGCTAAGTAGGTATTTGATAAGGTTCCATATTATATTTAAGCCTAAAATAGAAGAATCTTCCTTTACAGTAAATATTAAAAAAAAAAAACTATGGTAACCTAATAGTTAATATTTAGCTTCAGAACAGAAGCGGTCTCATTAAAATCAGAACACTGTTACCATAGCAACATTGATAATCCACATTGTTAAGGAGGTTCAGCCATCAAAGTGATTATTTATATAAAACAGAAAGAAGGGGCACAGCTCTTAGGAAGGGGGAACATTTATTATTTGAAACCGTGTGCCTATTAGAAAATGAAAGGTCATCCTTTTTTTGTAATTTTTAACTGAAAATATACAGCAAAGTGGCTAAATCAGATAAAATTTCTTGGTGCCAATAATAAGTATAAAATGTAAGAGGAAAATTTTCGTCCCTTTATTTTAAGTGCCCAGGGTCAGCCCATCCTGTTTCATTCCTGTGCTACAGCTTCCTGGAGTTAGTTAGGACTGGTAAATACTCCTGCGTTTTCTCAAGCATCTTCCCTTCATCTGCAG
Seq C2 exon
AACCAAAGGGAGCCGGCGCCAGTGCTGGTGGCTATGGTGGAGGCGGCGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGCAGCGGTGGAAATTTTGGAGGGGGTGGTCCTCCAGGACTGGGAGGACTATTCCAGGCTGGAATGCCGAAGCTGAGGTCCACCGCCAACAGGGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284:ENSMUST00000094681:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(69.0=90.9),PF0220515=WH2=WD(100=61.4),PF071726=GRP=PU(35.5=61.4)
A:
NA
C2:
PF071726=GRP=PD(63.2=78.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types