RnoINT0165602 @ rn6
Intron Retention
Gene
ENSRNOG00000018406 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:RGD Symbol;Acc:620887]
Coordinates
chr3:60161682-60165991:-
Coord C1 exon
chr3:60165844-60165991
Coord A exon
chr3:60161847-60165843
Coord C2 exon
chr3:60161682-60161846
Length
3997 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GTCTTTCCTTCTGTCTGCAGAAC
3' ss Score
12.14
Exon sequences
Seq C1 exon
TTTGTGGTTGCTTTTCAGGCCAATACTGAGAAACCCTCCTTGAATAAGACAGAACAGGCTGGGAGGAATGCCCTTCTCTCCGACATCAGCAAAGGGAAGAAGCTAAAGAAGACAGTCACCAATGACAGAAGCGCTCCAATATTGGACA
Seq A exon
GTAAGTAAAAACAACTCTTTCCCATAGTTGTAAATGGTTTATAGCTTAATGGTCAACCTATGCCTCCAACTGGATCTCTCCTCCTCTCTCCCTCTCCCTCTCCCTCCGCCGCCCCCCCCCCCCCATTGACAGCAGCTGCAAAGCTGGTGAAAGGCAGAACTGAGTCAGTCATTGTAGCCACAGCTCTAGCTTGAGCCCCCTCTAATGTCGCAGGAAGCCAGCATAATAATTCTTTGTCCAAGAAACACACAGCGGCGATTCTCTGCATTGCTCACAGGGCTTTCTGGAGATTAACCCGTTGCTCCTGGCATCAGAGACAGTGAGGCAGCATGAAACGTGGACGTGTCCTCGCCTTAGAATCAGGAGTCAGGACCTGGCACGCACCTTCCTCAGGCACACAACTTCAAGCCCTAATGTCTTCTTCATTTGTAAAGTGGAGATAGTGGAACCGATTTGCTGGCCACACGAGTCTGTCGTGAGCCTCCAGTGAGATAATGCTTGTACAATGCCCTCTTGTCTGCCAAGAGGAATTCTAGAGAAAGATGTGATGCCCAGGAGCTTGGAGACAGGAAATGAGATCACAAGTTTGCTTATCCCTACATCTGAGTCTGAGCTTTGTGCCATCACACAGGGTGTATATAAACAAGCAAGTAAGCACGATGTAAGCTTCCTCGCTCGCATTTATGAAGTGAAAAACCACCCCTGATTGGATCCAGGCCCCAACACCATCCTTTCGGTCTCCACAGGATTTATCATAGCCTCAGCTCTCATTTAGACTCAGGGAATGGAGTGGCCTGACAGTCACCAAATGCAGCTGTGACTAAACACGCAGGGTTTAGGAGGGTTAGAGGTCGGTAGGGGTCACGGGGAAAGGGGCTAAACAGGTAGAGAAGGAAGAAGTGTCAGGGGTGTGGGACTGAGAGTTGGAAGAGAAATGGAAAACAAAGGATTTGACTAGGGTTCTGTTGTCGGGTGCATATGAGGAATGCACAGCACCCAGAGAGGAACCATGGGTCTTCAGTTCGTGACTAACAGTCCGATCTCTAGATCAGAGCACTGCACAGTCAGCAACCATCTGGATGGTGGTCTCTGCCATTGGCTAGAGAAGCTACCAAGTGTCAGACAGAGGATGCCTGCTCTCTCTACTATAAGAATCTGGAGCCCCAGAGGACTCACTGTGAGTTCCTTACCAACTTTGAAGGAAACTGGACAGTCTGAGCTTCCTGACTCCCTAGTGCAGACTCCTCATATTCTTCCAGGTCCGTGTCTTCCACTGTGTAGAAGTAATGCTAGCCCTTTCCTCTCCAGCAGCTTGGTGATGCTGAGGGGTGAGCCTCTGACAAAAGCAAGTTACAATCTACTGTACACTTGGTTGTCCCTACCCTTAATCGGATACCTATACTGCTGTCTGAGCTCTCTGCAAATAACAGAATTCATTCTGTTCTGCACTGGTTTGCAGGCCAAACCGCCCTGGGCGCTATATCGAAGTGCTTGTGCATGATAGCTCTGTAATTTAGCCCTGTCCTGCTAGTTATCCTAAATGACAAAACTATTCAGCTATCCTCAATTTCAGTGTTTTTGTATTAGTCCGTTTTTGGTTACTGTAACAAAATACCTGACACCAAGTACTTTACGAAGAAATCTATTTAACTTATAGTTGAGAGGTTTAAGGGCAGGCCATTGGCATTGGCCTGGTTCTGCTGAGGACCTCATGGGGATGACATCACAACAATGGCAGAAGTAAAGGCATAAGGCAGACCAAAAAGAAGACAGAAAACCAGACTGGGGAGCAGCCAGTCTTGTTGTTATATAATTCTTTTCAGAACTAACTAAAGTTCTGTGTGACCATATTGGCTCCTTCTGAGAGCAGTAACCATCCCCTTCAATGGCCTCATTATTTTCCGCCAGTCTCTGTTTCCTAAAGGTTACACGCCCTCTCTCATGAACACACTGAAGACCAAGTTTCCCGTGTGAGCCTTGAGGGCCACATTTAAACCATATAGCATTTCCCTAGATGAACAATGGGTGGGGCTCCAGGTAGACAACACTGATGGATGTGTCTGATAGTACAGCCCACTTTCAAGTTAACAACAGAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTAAGCTGTCTTACTAGGTGATGAATAATATTTGAATGACAAGGACAGTGTTATATTTTATATTATTGGTAGTTAAAAGTTAGTAAAATTTTAAACTTCACACTAAAGCAATTTCACAAGCACTGCTGAAACTGTTGCTGTAATTGGGTTTAGCCTGTTAGGTAAAATAGTCCTTACCAATTCATTACCAAGTCATGTCTTTAGCGGAGAGCGGTACACATAGGAAAGACGGAGAACTAATGGCTAAGTGGCTAAGTTAGAAAAACACGTCAGTGAATAAAATGAAATCTCCCAAAGTCAATACAGAGCCTCGAGACAGGTTTTCTTATGTTGAGGATAGAATGTTGAAGCGCCATGCTGAGACACTTTCTGATGCTGCCTTTTGTGAGTGATGGGATTACAGGCGTGCTCCTTTTAAAATCTTGAAGTTAATTTCCTAGGAAATCATTAATGTATCAAACTTTACTCAGGAACCTAATCATAAGCAACGAAAAAGTCAGAAACTTTCTAAGATAAGTTTCTCTCTGGAAAACTGTGCATTAGAAGGTTCTTATTGGTAAGTTCTGTGTTTCAGTTTTCAATAAACAGCTAAATCAAATGCTGTATGACTCTTTCCCAACTCGGAAGCCACAGAAAGCGTTTTAGTAAGTGTCATGAAACTGCCCCTGTCCTAATACCAGAACGTAGCCCAGGCAGTGCACACACAAGGAGTCTAAGGGCCCGTGCTCCCACCTGGGGGGATCTTGCTTCCCAGAGGACTTGGGGCGATGTCTCCAGAGGTTCTGAGCGGTTTGTTTCTTCTCTCTTGCTTTCATTTTGTCGTGGGGATGGACGCCATAGCCAGGAGCATGTTAGGCAAGCGCTCTACCACTGAGCTTCCTGCTAAGCCTGGATGACAGGCACTCAGCCTTCTCCACCTGGGTAGAGATGGGAGCTTCAGTCCAGGGCAGGACAGCCACCCAAACACACTGTCAGCAAGGAGTTCCCGAAATAAGAAAATGACGTACGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGATACAGTGTACTCATATACATTTAAAAAAAAAAACAAAGAAAGAAAGAAAAGAAAGTGACATATGCCATTTATGAATAAGAAAACACTAAGCAAAAATACTAGTAAGAGTAACTGACCAAGACCAAAATCCCATTTTTAGTACTAGATTTAAAACCTATTCTAAATATCAAATAATATAAATTATATAAATGCTAACTAGGTATTTGATAAGATTCCTTATTATAAGTCTTTAAGCCTAAAATAGAAGAATCCTCCTTTTCAGTAAAAATTAAAAAAAAAAAAAATGGTAACCTAATAGTTAATATTTAGCGTCAGAACAGAAATGGTCTCATTAAAATCAGAACACTGTTACCATAGCAACATCGATAATCCACATTGTTAAGGAGGTTCAGCCATCAAGTAATTATTATTAAAACAGAAAGAAGGGGCACAGCTCTTAGAAAGGGGGAACATTTATTATTTGGAAACTGTGTGCCTATTAAAAAATAAAGGTCTCATTTTTTTTTTGTAATTTTTTAACTGAAAATATACAGCAAAGTGGCTAAATCAAATGAAATTTCTTGGTGCCAGTACAAAATGTAAGAGGAAGACGTCTCTTCCATTTTAAATGCCCAGGGTCAGCCCATAGTGTTTCCTCGCTGTATTACAGCTTCCTGGAGTTGGGACAGGTAAACTCTCCTGCATTTTCTCACTGTCTTTCCTTCTGTCTGCAG
Seq C2 exon
AACCTAAGGGGGCTGGCGGTGGCTATGGTGGAGGCAGCGGAGGCGGAGGAGGAGGAGGCAGCAGCGGTGGCGGTGGAAATTTTGGAGGGGGTGGTCCTCCAGGACTGGGAGGACTGTTCCAGGCCGGCATGCCGAAGCTGAGGTCCACCGCCAACAGGGACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018406:ENSRNOT00000024922:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF071726=GRP=PU(42.2=86.0),PF0220515=WH2=WD(100=54.0)
A:
NA
C2:
PF071726=GRP=FE(53.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]