BtaINT0162180 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001585 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:22269738-22275718:+
Coord C1 exon
chr2:22269738-22269867
Coord A exon
chr2:22269868-22275544
Coord C2 exon
chr2:22275545-22275718
Length
5677 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GTGTCTTCTTCCTTCTACAGAAC
3' ss Score
11.74
Exon sequences
Seq C1 exon
GCCAATACAGAAAAGCCTTCCTTGAGTAAGTCAGAGCAGGCTGGGAGAAATGCTCTGCTCTCTGACATCAGCAAAGGGAAGAAACTAAAGAAGACAGTCACCAATGACAGAAGTGCACCAATATTGGACA
Seq A exon
GTAAGTAAAAAAAGTTATTTTCCATGGAGATAAGTGGTTTATGACCTAACAATCAACCCTACCCTTCCCACCAAAAAAGTTTTTTTGTTTTTTTTTTTTTCTGGTTAACAACAGCTGTGAAGCTAGCAGAATAAGGGACTGTATCATTCATTGTAGGCCATGGCTCTGGCCTGGGTTCCCTCTAATGCTGCAGGAAGCCAGTATAATAATTCTTTGTCCAAGACACACACAGCAGTGATTCTCTGAATTATTCACAACACTTTACAACACTTTCTGGAAATTAACCCCTTGTCTTACCACAGAGCAAAAGGCAGCATGAAACATGGAAAGAGCCCTAGTCTTGGAATCAAAGGATGTAGATTTAAACCCTGACCATCTTCAACCCTTTGTCTCCATTTGTAAAATGGAGATAATAGCTGTTTCACTGCCCTCACATGTTTGTTGTGAGCATCAAATGAGACAGTGCTTATGAGAGTGTTATGTTGCCCGGAATGTATAATTCACGTGTACAGATATGATTATTAGGAGGTTGGAGAGAGAGGAAATGAGGTCACAACTTTGCTTATATCCATCATAAATCTGAGCTACTTCCTGGAACAAGATAGGGTATGTATAAACAAATAAGCACCTACCATACAGGGCTACTTATTAACATTTACAACAGAATGAAACATTACAGATGACTAGAATCTACCAGAAGTTAATTATCAGGCCTCAAGACTATCTCCTTGCACTCCTAGACATTTCCACTGCCAGCCAGCGATGCCCAGAATTTGTCCTAGACTATGGATCCCACTTGGACTCAATAGAAAATAGACTGCCCAAAAATCACCAGAGGGAGCTTTGTAGACAAGGGAATAATGATGTAGGATTTTAGCCGACTGGAGGATTAGAAGAGCTTAGGAAGAGTTTCAAGGAAAAGTGCCTAATAAGTAGAAGAGAAAGATGAGAATTATGAGATGTGAAAGTGAAAGTCACTCAGTCGTATCTGACTCTTTGCAGCCTCATGGACTTGAGTCCAGGGAATTCTCCAGACCAGAATACTGGAGTGAGTAGCCGTTCCCTTCTCTGGGGGATCTTCCCAACCCAGGTCTCCCACATTGCAAGTGGATTCTTTACCAGCTGAGCCACCGGGGAAGCCCAAGAACACTGGAGTGGGTGGCCTACCCCTTCTCCAGCAGATCTTCTCGACCTGAGAATTGAACTGGGGTCTTCCTGCATTACAGGCAGGTTCTTTACCAGCTGAGCTACCAGGGAATCCTAATGGGTAGAAGAGAAAGATGAGAGTTAGGTGAGAACACTGGTGTGGGAAGAAGGTAGAAAGAGAAATGTCATGACAAAGGCCTTTGAGTGCTGCTCTGTTACTGGGCAGGGTGGTACAGATCAGAATGCACCCCACTTCAGTGAAACTAGGGGGTCTTTGACTTTCAACAAACTCTTATCTATAATGGATAAAATGCCCACAAAATGGTATGGTTATTGTATAATCAGTCCCTTAGTTTTCCTTATCTTTGTCACAAGTTTCTCCCTGGGGGTTGCCCAGCCCAGGCAGTTCTGTCTGGGGAGCCTACATCCAATGCCACTGAATCGTGGTGCCTGCTATGGGGCTAGAGGAACTCTGTCTGCAAACTGCCAACCTCCAGAACAGAGCCCAGTGGTTCTCTCACTATGAGAGGGAGCTCAGACTCTGGAGAGGTAGATGTGAAGTCCCTAGATGTTGAAGGAGAATGGACTGTCTGGGGCCTAGTTCTGAATCCACTAGTGGAAATTCATTATATTCTTCAAGATACACTTCTCTCATTAAAATGGAAATAAGTGTTAGTTCTCCCTTTCAGCTGTTTAAGAATGCACTGGGCTTTGTGGACACCAGATGCAAACCAACGCATGCCCTCGTTGTCCAGGAACTTAATTGGACACTAATACTGTTGTCTCAAGCTCTTTACAAGTGGCAAAGTTCATCCATGGTTTTGTATTGTTTGCAGGTAAAACCTCCCTGGGCTCTATGTTAAAATGTTGACCATGGTTATGCATGTTGAGGTCAGCCTTGTCCTGAAATTTAATTTAATGCTAACAAAGTGACCAGTTAGCTAACCTCAGAGGCTAGTTTAGTTTCCCTATCTGAAGGCAGCACAAATGCTGCGAGTTAAGAACACTAATGTATGATGTCTGTTAGAACAGTACATCATTCTTTTTGAATGTTCCATACCAGGTAAAGGTGTCCTATGAACTGTAGTATTCCAAAATGTTTCATTCATCAGTGAATAACATTTGAATGACAAGGACATTATTCATATTACTGGCAATAATTAAAATTAGTAAAAATTTTAAATTTTATATGGAAGCAATTTTACACACACATCCAGAAACTGTGATTCTAATTTGATATATTTTATTGTGTGAAGTAATTCTTGAGAGCTCATTATCAGATTGTTTATTCTATTAGCAGAGTTCCCATCAGTATCCCAGAAAGTCTTACACCTAGAAAAGGTACAGAGCCGACACAGACTTACAATAAATCTAATCCAGAAAAAAAGAAAACATCAATGAATAAAATAGAGCTCAGAAAGCAGATTAAATAAATGACTCAAAGCAGATTTTCTAAAATTAAGGATGTGACAATGAAGTTATATGCTAAAACATTTTGAAATCTTAATTTTTTAAGAAAAGTACAGATTTACCAGAAATCACTCATGAAGCCTCAATGAACAAGGGAAAAGTTGAAAACTTTATCAAATTACTTTTTCTCTACAAAGCTTTAGAGCCAGATAATTTTTATCAGAAAATTCAGATTTTAAGACATAGCTAATTCAGACACTATATAAATCATCCCTAAACACAGACAGGAAAGCTACCTGATAGGTGTAATGAGACTAACATGATCCTAATATCAAAACATGACAAAGGCAGCTGTGTATCAATGTCTCAGGGGACATGTGGCAATGCCTAATGGCATTTTTAGTTACTACAACTTGAGGGAGGGGTTCCTACTGACATCTAGTGGGCAGAGGCCAGGGATGCTGTAAACATTCTACAGAGAATAACAGAGAACTCACGACAAAGAATTATCTGACCCAAAATGTCAGTAGTTCCAAGGTTAAGAAACCCTACTACGTATAGACCACTTATGATCACAGATGAAAGGACACTAAAAACCCAAAGACTCTAGGTCAGTAGTATACAGTACTAAAAAATAATAATTTTATAATTTACCAAGACCAGGGTTTATCTCATTTTTAATGTTAGAAAGTCCATATAGCCATCATACCAAATAAGGAAAACTATATAATGATCTCAGTAAATCCTAAATAGGCATTTAATAATATTCCATGCTATAAAAATAGTCTTAAAAACCCAGAGTGGAACGATCCTTGCTAACTATGAATATTTAGAAGAAAAAAGTTATTTCAAACCAACAGTCAATATGTAACTTTGAAACATTAGAGTAAATGTCATTCACTCTAGAGTAAATGACATTTACATTTAGACATTACATTTAGAGTAATTTTCATTAAAAGCAAAATATTATTGACTTAGTTTTATAGTACTAGTGACATTAATAATTTACTTTTAAGATAAATATATAATGTATATTTATTCTTTATAATTATTTTAAAATAAACCATCTTTAAATTAATAAAACATTAATAACCTTATTATGGAAACTCAGTCATCTAAGTAATTTCTTATATAAAAGAGAAATAAGATATACAACTGTTAGAAAAGAGGAGGTAAAACCTTTGTGATTTGCAGACCATTTGTCTATTAGAAAATCCAAAGGAAAGTGTTAGTCACTCAGTTGTGTCCAACTCTTTGTGACCCATGCACTGTGCCCACCAGACTCCTCTGTCCATGGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTTCTCCAGGAGGTCTTCCTGATCCAGGGATTGAACCCAGGCCTCCTGCATTGCAGGCAGAATCTTTACCATCTGAGCCATCAGAGAAGCTCAGAAAATCCAAGGTAAAAAATTAATACATTTTAATTTTGAAAATGCAAAGTGATTTATTAGATATCAAATGAAATTTCCTGATGCCAATAATAACCATATCCAAACTATAGTAGCAAAAACATTCATCATTTCAACAAAAATGTATATGAAGTAACCCTGAAAGAAATATGGGTGACTCTCATTACAAAAATTATAAAATTTTACTGAATGAATCAGAACACATGGGAAAACATAGCATGTTTCTATAAAGTCTAAATATCATAAAAGTGTCAGTTCTCTCAGATTATTGTGTAGATATCATGTAATACTTATCAAAGACTCAACAAGGTTTTCCAGGGGTAGAACTTTAAACAGTACTCCTGGTAGCTCAGAGGTTAAAGTGTCTGCCTGCAACTCTTTGTGGTAGCAAAGAGTCGGACACGACTGAGTGACTTCACTCACTCACTAGCCTCATAAAATATACATACATAAATTGTTAAGAGATAGTTTTATTAAGAGGGTAAAATCATGGCTGTAATATGGATATAAAATAAACATATATCAAATATTTTCTTTAGCTCATTAATTTAATGAGGGAACCAATATGATATTATCAATTCAAAGGAGAATTATAAGTACCACACATATGCAAGCAGGTGAGTGTTGAAATGAATTTGCAAATAGGTGTAAAATAGGTCAATAATCAGTTGAATTACACTGAACACAGCCAATATGCATTTCTATGGACAAATACGCATTATTTTCAGTTTTCTACAACTTACAGAGTTATAGACTAACTCAAAGGCAATGGGAAATGACCCAGAAGGCTAACTGGATACTTGGTAATCCTTTTCTTTCTTCTTCTTTTCCCTTTTTGTTGGTCTGCCCATTTCAGAATCTTTCACAATTTTTTTTTTGGCAACAAATGCAAAATGAAACAATCTTTACATTGTCTTAAGTTGCGAAGAATTTTTAAAATGTTCAAGTCTACTGTTGGGTTTTATGATATTAAAAAATTGAAATCAACCTGAAAGGCCATCAAATAAGTAAATGGTTAAATAAATTACAGCACATTCATGTTCTAAAACACAATGCAATCCTTTAAACTCATGTTTTCAGAGAATATTTAATAACATGGGAAATGCTAACAATATTGAGTGAAAAAAGCAAACTAAAAACTATGTAGTGAATTTGGTCTTGGTTTTAAGAAAAAAAAGTGTATACAGTGAAAAAACTGGCAGGGGAAAAAATATACAAAAACAGCGGGTATTTCCATGAAGCAAAATTATGGGATATTTTACTTTCTTCTATTTTTACCTGTTCCTTTCTTCTCACCTTTTATTGCATCTTCTCCTCCCTTAACACATTCTTTCTTTGAAGATACGTTTATTTGCCAAATCTTCTGATACAGAACAAATAGATATTATTAATTCATATGGCAGTGAGCCAGGTAGAGGAAAGACATTATCTATTGCTGATTCTTCCACCACAGGGCTTGAGATAGCCCTGGAGTAGAAAGAACCTCTGCTCTTCTGACTGGAAATAGGGTGAGTCCTTAAAATCCTACCCTTTAATGAAATCCCAGTTGTCCACCATGGGCTTAGGGTCAGCCAGCTTCCTGCTGTATCATTGTTTACTTGGGCCAGGACTGGTGAAGTTCTCTGGCAGTGTCTTCATACATGTGAAAAGAATGTGTCTTCTTCCTTCTACAG
Seq C2 exon
AACCCAAAGGAGCTGCTGCTGGCGGCGGCGGTGGTGGTGGTGGCGGCGGCAGCTATGCTGGAGGTGGCGGAGGAGGAGGTGGTGGAAATTTTGGCGGAGGTGGACCACCCGGTTTGGGAGGACTGTTCCAGGCTGGAATGCCGAAGCTGAGATCCACAGCCAACAGGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001585:ENSBTAT00000002076:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]