DreINT0175761 @ danRer10
Intron Retention
Gene
ENSDARG00000104300 | wipf1a
Description
WAS/WASL interacting protein family, member 1a [Source:ZFIN;Acc:ZDB-GENE-080204-101]
Coordinates
chr9:2457753-2458151:+
Coord C1 exon
chr9:2457753-2457882
Coord A exon
chr9:2457883-2458016
Coord C2 exon
chr9:2458017-2458151
Length
134 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTAACTGTTCATTTATACAGAGC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GCAAACACAGAGAAGCCGAATCTGAGCAGGAATGAGCAGCAAGGGAGGAACGCTTTACTTTCAGACATCAATAAAGGGGCTCGACTGAAGAAAACCATCACCAATGACCGCAGCGGCCCAGTGCTTGACA
Seq A exon
GTGAGTTCTGAAAATACTACTATACACAATATAAGTGCACTCTATATACACTCCTACTACCGTGTACAATACACACATTACACAAAACATGCTTTTTTAAGGAACACTCCACTTTTAACTGTTCATTTATACAG
Seq C2 exon
AGCCCAAAGGAGGTGGAGGTGGAGGAGGAGGAGGTGGAGGAGGAGGTTTTGGGGGCGGAGCTTCAGGTGGAATGGGCGGCCTGTTTCAAGGAGGAATGCCAAGGCTGAAATCAGCAGGAAACCGAGATGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104300:ENSDART00000166579:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(67.3=84.1),PF0220515=WH2=WD(100=61.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGGAATGAGCAGCAAG
R:
ATTGCCATCTCGGTTTCCTGC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]