HsaINT0182989 @ hg38
Intron Retention
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:174575204-174581439:-
Coord C1 exon
chr2:174581310-174581439
Coord A exon
chr2:174575381-174581309
Coord C2 exon
chr2:174575204-174575380
Length
5929 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GGGTGTCTCTTCTTCTACAGAAC
3' ss Score
9.48
Exon sequences
Seq C1 exon
GCCAATACAGAGAAGCCTACCTTGAATAAGACAGAGCAGGCTGGGAGAAATGCTCTCCTTTCTGATATCAGCAAAGGGAAGAAACTAAAGAAGACGGTCACCAATGACAGAAGTGCACCAATACTGGACA
Seq A exon
GTAAGTAAAAAAAGGCTATCTACCATGGAGAGGAACAGTTTATGGCCTAATAATCAACCCTACCCTCACCACTCAATTTTTATTTTATTTTATTTTTTGGTTAACAACAGCTGCAAAGCTAGCAAAATAAGGGACTGTATCACTCCCTGTAGGCCGCAGCTTTGGCTTGGGTTCCCCTCTAATGCTGCAAGAAGCCAGTATAATAATTCTTTGTCCAAGACATACACAGCAGCAATTCTCTGCATTATTCACAACACTTTCTGGAGATTAACCCATTGCTCCTGGCACCACAGATGAGGAGGCAGCATAAAATATGGAAAGAGCCCTAGCCTTGGAATCAAAAGCTGTGGGTTCAAGACCTGGCACATCCATCCTGTACCATCTCCAAGCCTTGTTTTCTTCATTTTAAAATGGAGATGATAATACATGTTCTATTGACCTCACAAGTTTGTCATGAGCTTCAAATGAGATAATGCCTGTAAAATGTTTTGTTGTCTGGAAAGTGTAATTCAAGTGTAAGATACAATTATTAGGAGCTTAGAGAGAAAGAAAATGAGGTCACAACTTCAGTTATCAACCCACCTAAGTCTGAGGTACTTTCTGGAACAAAGCTACTTATTAACATTTACAACAGGACAAAAAATAATCCATGACTAGAATTCTACTGGCAATTAATAAGTAGATCTTAAGCCTGTCTCCTCACATTCCTAGACCCTTCCTTTGCCTGCCAGATGTCCCCAAGATTCATCCTAGACTACAGATCCCATTTGGACGGAACAGGAAATAGACTGACCTTCCAAAATCACCAGATGGATCTTTGTCAACAAGTGAATAATGAGGCAGAATCTTTGCAAAGTAAAGGATTAGAAGTGCTTCAGGGAACTTTCTGGGAGAAATACCTAATGAGTAGAGAAGGAAGAAGAAGGATCAGAGTTAGGTGGACTACTGGTTTGGGAGGAAAAAGGAAAAGTGAAAGACCTAGATAAGGCCTTTGAATGTTGTTCTGTTACCGGGCAAAGTGCTGCGAGTGAGAATGCACTGCTTTCAAAAAGGAACTATGGCCGGGCGCAGTGGCTCGCACCTGTAATTCCAGCACTTTTAGAGGCTGAGGCGGGTGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTTGACAACATTGTAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCACAAGAATCACTTGAACCAAGGAGGTGGAAGTTACGGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAGGAACTAAGGTATTTAACTCTTGACACAGTCTGACTTGTAAGTCAAAATGCCCACAAAACGAATGTGGTTATAATATATTCCCTCTAATCCCTCAGCCCTCCAAGCCCTCCAATAGCCATCTGAATCATGGTCCCTGGTATGAGGCCAGAGGAGCTGACCTCTAGGACAGAGGCCTGTGGTTCTCCTCACTGCAAGAGGGAGCCTAGGGCTCTGTTGAAGGAGGCTGGACAGTCTAGACCTATTCCTGAATCCACTAGTGGAAACCTTGAAGAATTGTATTCTTCAATGTCCACTTCTCTTATTTAATGGAAATAGTGTTAGTCCTTCTCTCTTCCATGATGTTTAATAATGTGCTTTCCTTGATGGAAGGAAGATACAGTCCAGTGCAGGCCCTTGTCCACACACTCAACTGGACACCTATACTGCTGTCACAAGCTCTTTGCAAGCAGCAGTGTTTATCCACAGTTTTGTATCTGTTTGCATGTGAAACTTCCCTGGGCTGTATGTCAAAATGTTGACCATGGTTATGTGTGATAACTCAGCCCTGTCCTACAGTTTAATTACTGAAAAAATAATCTGAAAGCTTAATCCTCAGCTTTAGCTTCTCTTTCTGAAAGATGGACAGATGTTGCAGGTTAAGAACACTAATGGGCCAGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAAGTCGATCACCTGAGGCTGGGATCACCTGAGGCATGGAGAAACCCCATCTCTATTAAAAATACAAAATTAGCCGGGTGTGGTGGCGCATGCCTGTAATCCCAGCTATTTGGAAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCATTGTACTCCAGCCTGGGCAACAAGCGTGAAACTCCATCTCAAAAAAACAAAAAAAAGAACAGTAATGGGTGATGTCTGATAGTGCAGGAGTCCCTCTAAAGTTTCAGTACCATGTAAACGTGTCCTGTGAAGTGCAGTATTCCAAAATGTGTCATTCATCAATGAATAGTGTTTGAATGACAAGGGCGATGTTAATAGCAAAATTTTTAAATTTTATATGGAAACAATTTTGCATACACTTCTAGAAATTGTTAGTCTTATATGATTTATCCTGTTAGGTGAAGTAATTCTTGTCAGTTATTATCAGATTATTTCTTCCACAGCAGAGCTACCATAAGCATCTCAGAAAGCTCCACATCTAGAAAAGATACAGAACTAACACAAATTTATGATAAACCTAATCCAGAAAATGGAAATAAAAATGAATAAAAGTGGAACTCAGAAAGCAGATAAAATAAGAGATTCAAAGCATATTTTCTAAAATTAAAGTAGTGTAATAAAGTTATCTGCTAAAATGTTTTAAGATATTAAAGAAAGTACTTTTCTAAGAAAAGCATATATTTATTCAGGAAACCTCAATGAGCAAGGGAAAAGATAAAAACTTTATTAAATTACTTTCTCTCCAAAAAGTTTTGGAGCCAGATTATTTTATTAGCAAATTCTTTCAAATTTTAAGAAACAGCTAATTCAAATGCTGTATAAGTCATTCCCCAATATATTAAGAGATGGAAGGCTGTCTAATAATTGTAATGAAATTGGCATGATCCTAATGTCAAAACTTGACAAAGGCAGCACATAAAAAAAGAAAGCTGTACATTAGTGGTTTTCAACTGAGGGTGATTTTTGCATTCCAGGGGATATGTGGCAATGTCTGAAGACATTTTTAGTCACTACTTTGGGGGACAGGGAGGGCTGCTACTGACATCTAGTGGGTAGAGGCCAGGGATGCTGTAAACATTCTGTAAAGAACAGGACAGGACAGCCACCCACAAAAAAGAATTATCTGTCCCAAAATGTTTATAATTAAGAAACCCTATTATGGACCACTTATCATCATAGATAAGAGAACACTAAAATACCAAAAAACAAATCTAAATCAATCAGATGTTACAAGAATAATTCACCAACACCAGGGTTTATCCCCCTTTTTTTTTTTTGGAGACAGGGTCTTGTCTTGTCACCCAGGCTGGAGTAATGGTATGAACACAGCTCACTGCATCCTTGACCTCCCAAGCTCAAGGGATCCTCCCACCTCAGCCTCCCAACTAGCTGGGACTACAGGCATGCACCACCACATTTGGCTCATTTTTTGTAGAGATGGGAATCTCACCATATTGCTCAGACTGGTCCTGAACTCCTGAGCTCAAGCAATCCACCCGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCGTTGCACCTGGCCTATCCCATTTTTAATGTTAGAAAGTCTATCCATCATATCAAATAAAAAAGACCATCAAAAAGCCTCAGTAGATCTTGAATAGGCATTTGATAAAATTTCATGCTATAATAAATTCTTGTAAACCTAAAATAGAAGGATCCACAGACTGAATATTTAGAAAGGGAAAAAACCTATTTCAAACCAATAATTCATATTAACTTTGAAATATCAGAGGGATTCTCATTAATATCAGAACATGATTGCCTTTAGAAACGTTAATAATTTACATTGTTATGGAAATTTACCCATCAAAGTAATTACTTATATAAAACAGAAATAAGACATACAACTCTTAGAGAAGAGGAGGCTTTAAACTGTCATTATTTGAAGACCATGTGCATACTAGAAAATGCAAGATAATACATTTTTAGTAAATTTTATTTAGAAAACATAGCAAAGTGGCTTATTAGATATTAAATACAATTTCCTGGTGCCAAAAATAACCAATTACAAAATATAACAGGAAAAACATCCCTTTCACAATTTCAGCAAACAAAAATACATTTGAAGTAACCCTAACAAAAAGCATGTGTAATGTATATCATAAAAACTAAAAAACTTTGCCAAAAAATCCAGAAGACATAAATAAATGGGAAAATATACCACATCTCCAAATGGAAAGTCTAAATATCATAAAAGTATCAGTTCTCCCAGATTAATTTGTAGATTTCATATACTATTTATCAAAAACTCAACATAGTTTTTTGGGAAGAGGACTTTAAATAATGTTTAAGCTCATAAATACAAACATGCATACATACATAAATTAAGAGATAATTTTTTTAAAGAGGGTATAAGCATGGCTTAAACACAACTAATTTGCACTTCTTTGGACAAATACCATTGCATTAGTATCAGTTTTCTATGCCTTTCAGAGTGATAAGATACTGTGGCTCAAAGACAATGGAAAGTAACCCAGAAGACTAGACAGAATACTCAGTAATCTTTTTGTTTGTTTGTTTGTTTGCCTCCCATCAAAATCTTTCACAATTTTTTGCAGATAAATTCAAAATAAAACAAGATCTTTATACCCTCTCAAATTGCAAAGAATGTTTAAATTACTAAAGCCTACTATTGGGCTTCATGATATTAAAAAATTAATAGCAATCTAAAGGGCCATCAAATGAGTAGTTAAATAAATTTTAATGTAATACATTCATGTTCTACAATACAATAGAATCCTTTAAACTCATGTTTTCAAAGAGTATGACACAAGAAGTGCTAACAAAGTGTTAAATGAAAAAAGCAGGCTTAATACTGCTTAGTGAATTTGTTCTTAATTTTAAGAAAAAACACATAAAATGAAAAATACTGATGGGAAAAAGTATAACTCAATTGTGGATATTTGCTTAGTGTTTTTTTTTTTTTTTTTTTGCTGGAGTGCAGTGGTGCAATCATAGCTCACTGCAGCCTCAGTGGGTTCAAGTGATCCTCTCACTCAGCCTCTTAAGTAGCTGGGACTACAGGTGTGCACCACCATGCCTGGCTACATTTTGTTGTTGTTGTTTATTTTCGTAGAGACGAGGTCTCACTTTGTTGCCCAGGGTGGTCTCAAACTTCTGGGGCCTAAGCTATCCTCCAGTCTCAGCCTCCCAAAGTGCTGGTATTATAGGTGTGAGCCACTGTGCCTAGCCTGGATATTTGTATATTTGTGAAATTATGAGATATTTTATTTTCTTTTCTTTTTAACTCTTTCCTTTCTTCTCGCCTTTTATGGCATCTCCTCCTCCCTTGCGACCCTCTTTCTTTGAAGATCCTTTTTACTGAGACAGGGTCTCACTGTCACCCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCCCTGCAGTCTTGACCTCCCTGGCTCAAGCGATCCTCCCACCTCAGCCTCCCAAAGTGCTGAGATTACATGTGTGAGCCACTGCACCCAGCCTGAAGATCCTTCTATTTGCCAAATCTTAGGATACGGAACAAACAGATACTGACCCATGTGGCAGCCAGTCAAGTGGGGAGTGTGGGGACAAATCATCCTTTATTTTCGTTTCTTCCACCACTGGGCTTGGGACTGCCTGGAGCGGGCAGTTCTGACTGAGCTGAGGGAACTCTTAAAATCCTGCATTTTAATGAAGAAATCCCAGTTGTCCACTGGAGGCCGAGAGCCGGCCAGCTCCCTGTTGTACTGTTGTTTTATGGTTTACCTGGGCCAGACCAGGGGGCATAGTCTGTCGGGTGTCTCTTCTTCTACAG
Seq C2 exon
AACCTAAAGGAGCTGGTGCTGGAGGCGGTGGTGGTGGCTTTGGTGGAGGCGGCGGATTTGGCGGAGGAGGTGGTGGCGGAGGCGGTGGAAGTTTTGGAGGGGGCGGACCTCCAGGTCTGGGAGGATTGTTCCAGGCTGGAATGCCGAAGCTGAGATCCACGGCCAACAGGGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935:ENST00000392547:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(68.4=88.6),PF062736=eIF-4B=FE(31.2=100),PF0220515=WH2=WD(100=61.4)
A:
NA
C2:
PF062736=eIF-4B=FE(40.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains