MmuEX6000752 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31966206-31967260:-
Coord C1 exon
chr18:31967130-31967260
Coord A exon
chr18:31966820-31966977
Coord C2 exon
chr18:31966206-31966359
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAACCAGCCTTCTCTGGCAGGGC
3' ss Score
4.91
5' ss Seq
TTGATATCC
5' ss Score
-7.71
Exon sequences
Seq C1 exon
AGCTTGCTGGCCATGTCACCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCGGGCTCTGGAGCCACCACTGGAGGATCAGCTCACAGAGTCGCCATACACCCTGGAGGAATTCTCCTACCAGTTCTTCAG
Seq A exon
GGCTCCGGAGAAAGAGACTATCAGCAGGGCTGCGATGCCCATGGCCCGAAGCCGGGGTCATCTCTGGGCCTACTCCCCAGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAACTGCGGGATGCAGCCTGCCAGATCTTCCTTG
Seq C2 exon
CCATCCTCAAGTACACAGGTGACTACCCTTCCCGCCAGTCCTGGCACAGCCTGGAGCTCACAGACCAGATGTTCTCGTTAGCCCTGCAGGACCCAGCCCTGCAGGATGAGCTGTACTGCCAGATCCTGAAGCAGCTGACCCACAACTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'46-53,'46-52,47-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078412=MyTH4=PU(34.6=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGAGAAACGGAAGCTGG
R:
GTCAGCTGCTTCAGGATCTGG
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types