MmuEX6000921 @ mm10
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34749517-34751211:-
Coord C1 exon
chr18:34751114-34751211
Coord A exon
chr18:34750738-34750798
Coord C2 exon
chr18:34749517-34749611
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTACCATCCGTTCAGATT
3' ss Score
7.71
5' ss Seq
GGGGTAAAT
5' ss Score
4.46
Exon sequences
Seq C1 exon
ATCGGTTTCTTCTGGTCAAGAGTGTGAAACTGCGTGGTCCGGATCAAGCCAGTGTTCTCTTCGTTCCACCTTTGAAGTCCTGAGCTTGCCTGACGTCT
Seq A exon
ATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGG
Seq C2 exon
AGGAACCCCAAAATGTTGCCTTGACCTTTCGAATCTTAGCAGTGGAGAGATGTCTGCCTCTCCGCTTACTACTTCTGCTGACCTTGAGGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-'1-7,'1-6,2-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.562 C2=0.515
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF066178=M-inducer_phosp=PU(7.4=36.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGATCAAGCCAGTGTTC
R:
AGTAAGCGGAGAGGCAGACAT
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types