BtaEX0008051 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51339846-51344138:-
Coord C1 exon
chr7:51343938-51344138
Coord A exon
chr7:51343151-51343359
Coord C2 exon
chr7:51339846-51339879
Length
209 bp
Sequences
Splice sites
3' ss Seq
TAGGTTTTGTTTTTTCTTAGAAC
3' ss Score
6.94
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACTCTTAGGCTGTAACTTCAACCTGCTGAGAGAAGCGGCGAAACCCAAACCTGGCCTATCTGGTCGAGAGGCATAGATGTATGGTTAAATCGCCTCCGTTACCTCAGATTTTTCTTTAGTTCTTCTAGAATCTTCGCTTGTGTCTGATTTCCCTGCTTACTTTCATTCCTCCTGAAGGCAAGTCTCGGACTCAAACCTGCG
Seq A exon
AACTCGGAGACCATGTCTGCAGAATTCTTCTCATCCAAAAGAGAGGAGGGAAGCCTTGCCTCAGGACCTAGTTTTAGGTCCAATCAGAGGAAGATATTAAACCTGCTCCTTGAGAGAGATGCTTCCTTTTCCATCAGTTCAGATCTCCCTACAACTCCAGTGGAGAAGAAACTTTTTGGTGACTCTGCAAACCTAAGCATTTTGTCTGG
Seq C2 exon
GAATTACCGCCAACATCTTATAAAATGTAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF066178=M-inducer_phosp=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGTAACTTCAACCTGCTG
R:
GGGCTACATTTTATAAGATGTTGGCG
Band lengths:
228-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development