RnoEX0018919 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27548016-27550047:-
Coord C1 exon
chr18:27549950-27550047
Coord A exon
chr18:27549573-27549794
Coord C2 exon
chr18:27548016-27548110
Length
222 bp
Sequences
Splice sites
3' ss Seq
AGTGTTCTTCTCCTAGATAGCTC
3' ss Score
1.94
5' ss Seq
CGGGTAAAT
5' ss Score
6.15
Exon sequences
Seq C1 exon
ATCCGTTTCTTCTGGTCAAGAACGTGAAGGTGGGTGGTCCGGATCAAGCCAGTCTTCTCTGCATTCCACCTTTGAAGTCCTGAGCTTGCCGGAAGTCT
Seq A exon
CTCCACCTCGCTCGGTGAAGACGCTGAGGTCATGTCTACAGTACCTTTCCCAGCTGCAAGTGAAGAGGGGAGTTATGTCTCAGCACCCAGTTTTAGGTTCAAACAAAGGAAGATGTTACACCTACTTTTGGAGAGACACGCTTCTTTTACCGTTGGTTCAGATTTCCCCGAATCTCCGGGTGACAAACTCCATGACTCGGCAAACCTAAGCCTTCTGTCCGG
Seq C2 exon
AGGAACCCCAAAATGTTGCCTTGACCTTTCGAGTCTTAGCAATGGAGAGGTGTCTGCTTCTCACCTTTCTACTTCTGCTGACATTGAGGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'1-4,'1-3,2-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.328 C2=0.394
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF066178=M-inducer_phosp=PU(7.5=39.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTTTCTTCTGGTCAAGAACG
R:
CGTTTTCCTCAATGTCAGCAGA
Band lengths:
192-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]