MmuEX6000921 @ mm9
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34909171-34910865:-
Coord C1 exon
chr18:34910768-34910865
Coord A exon
chr18:34910392-34910617
Coord C2 exon
chr18:34909171-34909265
Length
226 bp
Sequences
Splice sites
3' ss Seq
CTGGAGTGTTCTTCTCCTAGATA
3' ss Score
5.53
5' ss Seq
GGGGTAAAT
5' ss Score
4.46
Exon sequences
Seq C1 exon
ATCGGTTTCTTCTGGTCAAGAGTGTGAAACTGCGTGGTCCGGATCAAGCCAGTGTTCTCTTCGTTCCACCTTTGAAGTCCTGAGCTTGCCTGACGTCT
Seq A exon
ATAGCCCCACCTCCCTCGGTGAAGACTCTGAAGTCATGTCTACAGGACCTATCCCACCTGCAAGTGAAGAGGGAAGTTTTGTTTCAGCACCCAGTTTTAGGTCCAAACAAAGGAAGATATTACACCTACTTTTGGAGAGAAACACTTCTTTTACCATCCGTTCAGATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGG
Seq C2 exon
AGGAACCCCAAAATGTTGCCTTGACCTTTCGAATCTTAGCAGTGGAGAGATGTCTGCCTCTCCGCTTACTACTTCTGCTGACCTTGAGGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-'1-6,'1-3,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.562 C2=0.515
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF066178=M-inducer_phosp=PU(7.4=36.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCTTCTGGTCAAGAGTGT
R:
TGTCCTCAAGGTCAGCAGAAGT
Band lengths:
188-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: