MmuEX6002780 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4484581-4485884:+
Coord C1 exon
chr6:4484581-4484688
Coord A exon
chr6:4485381-4485488
Coord C2 exon
chr6:4485831-4485884
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATGTTCTCTGCCACTCTAGGGT
3' ss Score
8.85
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGAGCCCCTGGTACCGCAGGTCCTCAGGGTCTTCTTGGTGCTCCCGGTATTCTGGGTCTCCCTGGCTCTAGAGGTGAACGTGGTCTGCCAGGTATTGCTGGTGCTCTG
Seq A exon
GGTGAACCTGGTCCTCTGGGCATCTCAGGCCCTCCTGGTGCCCGTGGTCCCCCTGGTGCTGTGGGCAGCCCTGGAGTTAATGGTGCCCCTGGTGAAGCTGGTCGTGAT
Seq C2 exon
GGTAACCCTGGCAGCGATGGTCCCCCAGGTCGTGATGGTCAGCCTGGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'47-51,'47-49,49-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(2.7=5.6)
A:
PF0139113=Collagen=FE(46.7=100)
C2:
PF0139113=Collagen=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCCTGGTACCGCAG
R:
CTTGTGTCCAGGCTGACCATC
Band lengths:
161-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: