GgaEX0014275 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23733047-23735177:+
Coord C1 exon
chr2:23733047-23733154
Coord A exon
chr2:23733587-23733694
Coord C2 exon
chr2:23735070-23735177
Length
108 bp
Sequences
Splice sites
3' ss Seq
TACCACTGTTCCTGTATTAGGGT
3' ss Score
8.07
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GGTCCTCCCGGTACCCCAGGTCCTCAGGGTATTCTTGGTGCTCCTGGTATCCTTGGTCTGCCTGGCTCTCGGGGAGAACGTGGTCTTCCAGGCATTGCTGGAGCAACA
Seq A exon
GGTGAACCTGGTCCTCTGGGTGTTTCTGGTCCTCCTGGTGCTCGTGGTCCCTCTGGTCCTGTGGGTTCTCCTGGTCCTAATGGTGCTCCTGGTGAAGCTGGTCGTGAT
Seq C2 exon
GGTGAGCGTGGTGCTCCTGGTAACCCAGGTCCCAGTGGTGCTTTGGGTGCTCCTGGTCCTCATGGCCAAGTTGGTCCTTCTGGAAAGCCTGGAAACCGTGGTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-33/39=32-35
Average complexity
C2*
Mappability confidence:
86%=100=85%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(38.9=100)
A:
PF0139113=Collagen=FE(38.9=100)
C2:
NO
Main Skipping Isoform:
ENSGALT00000015703fB6340
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCCGGTACCCCAG
R:
CACCACGGTTTCCAGGCTTTC
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]