GgaEX0014275 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23561970-23563890:+
Coord C1 exon
chr2:23561970-23562077
Coord A exon
chr2:23562510-23562617
Coord C2 exon
chr2:23563837-23563890
Length
108 bp
Sequences
Splice sites
3' ss Seq
TACCACTGTTCCTGTATTAGGGT
3' ss Score
8.07
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GGTCCTCCCGGTACCCCAGGTCCTCAGGGTATTCTTGGTGCTCCTGGTATCCTTGGTCTGCCTGGCTCTCGGGGAGAACGTGGTCTTCCAGGCATTGCTGGAGCAACA
Seq A exon
GGTGAACCTGGTCCTCTGGGTGTTTCTGGTCCTCCTGGTGCTCGTGGTCCCTCTGGTCCTGTGGGTTCTCCTGGTCCTAATGGTGCTCCTGGTGAAGCTGGTCGTGAT
Seq C2 exon
GGCAATCCTGGAAATGATGGTCCTCCAGGCCGTGATGGTGCTCCTGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641-'42-43,'42-42,43-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(38.9=100)
A:
PF0139113=Collagen=FE(38.9=100)
C2:
PF0139113=Collagen=PD(5.6=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCCGGTACCCCAG
R:
GCCAGGAGCACCATCACG
Band lengths:
155-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]