MmuEX6002786 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4477055-4479121:+
Coord C1 exon
chr6:4477055-4477153
Coord A exon
chr6:4478306-4478413
Coord C2 exon
chr6:4479068-4479121
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCACATGGTTTTCATTCCAGGGT
3' ss Score
8.36
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGAGAACGTGGTACCCCGGGTGAGAGTGGAGCTGCTGGCCCTTCTGGTCCTATTGGAAGCCGAGGTCCCAGTGGAGCCCCAGGGCCTGATGGAAACAAG
Seq A exon
GGTGAAGCTGGTGCAGTCGGTGCTCCAGGCAGTGCTGGTGCCTCTGGGCCTGGTGGGCTTCCAGGAGAGAGGGGTGCTGCTGGCATACCTGGGGGCAAAGGAGAAAAG
Seq C2 exon
GGTGAAACTGGTCTCCGAGGTGACACTGGCAACACTGGTAGAGATGGTGCTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(44.4=100),PF0139113=Collagen=PU(35.6=78.8)
A:
PF0139113=Collagen=PD(23.6=47.2),PF0139113=Collagen=FE(47.9=100),PF0139113=Collagen=PU(42.0=80.6)
C2:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=PU(12.5=61.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTACCCCGGGTGAGAG
R:
ACGAGCACCATCTCTACCAGT
Band lengths:
146-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: