GgaEX0028387 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23725972-23736736:+
Coord C1 exon
chr2:23725972-23726070
Coord A exon
chr2:23726763-23726870
Coord C2 exon
chr2:23736629-23736736
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAATAACCTGTTGTTGCTAGGGT
3' ss Score
3.29
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGCGAGCGTGGTCTTCCTGGTGAAAGCGGTGCTGTTGGTCCTGCTGGTCCTATTGGAAGCCGTGGTCCATCTGGCCCACCAGGCCCTGATGGTAACAAG
Seq A exon
GGTGAGCCTGGTAATGTCGGTCCTGCTGGTGCTCCTGGTCCCGCTGGGCCTGGTGGAATCCCAGGAGAGAGAGGTGTTGCAGGTGTTCCAGGAGGCAAGGGTGAGAAG
Seq C2 exon
GGTCCTCCTGGTCCTTCTGGTCCTCCTGGTAAGGATGGTCGCAATGGTCTCCCTGGACCCATTGGCCCTGCTGGTGTACGTGGATCTCATGGTAGCCAAGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-23/39=22-39
Average complexity
C2*
Mappability confidence:
93%=100=95%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(42.6=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTGGTCTTCCTGGTGAA
R:
CAGGGCCTTGGCTACCATGAG
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]