BtaEX0009634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11646703-11657578:+
Coord C1 exon
chr4:11646703-11646801
Coord A exon
chr4:11647983-11648090
Coord C2 exon
chr4:11657471-11657578
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCGCATGTGTTTGATTCAAGGGT
3' ss Score
4.54
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGGGAGCGGGGGCCCCCAGGTGAAAGTGGTGCTGCTGGGCCTACTGGGCCTATTGGAAGCCGAGGTCCTTCTGGACCCCCAGGGCCTGATGGAAACAAG
Seq A exon
GGTGAACCGGGTGTGGTTGGCGCTCCAGGCACTGCTGGCCCATCTGGTCCTAGCGGACTCCCAGGAGAGAGGGGTGCGGCTGGCATTCCTGGAGGCAAGGGAGAAAAG
Seq C2 exon
GGCCCTGCTGGTCCTTCTGGCCCCGCTGGCAAAGACGGTCGCATTGGACAGCCTGGTGCAGTCGGACCTGCTGGCATTCGTGGCTCTCAGGGTAGCCAAGGTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472_MULTIEX1-24/40=23-40
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=FE(49.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCAGGTGAAAGTGGT
R:
CAGGACCTTGGCTACCCTGAG
Band lengths:
194-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development