MmuEX6002790 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4474117-4474929:+
Coord C1 exon
chr6:4474117-4474170
Coord A exon
chr6:4474502-4474555
Coord C2 exon
chr6:4474876-4474929
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCGCTTATGTCACTTTCAGGGT
3' ss Score
9.54
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGCTCCAGGACCCGATGGCAACAATGGAGCTCAGGGCCCCCCTGGACCCCAG
Seq A exon
GGTGTTCAAGGTGGCAAAGGTGAACAAGGCCCTGCTGGTCCTCCTGGCTTCCAG
Seq C2 exon
GGTCTCCCTGGTCCCTCAGGTACTACTGGAGAAGTTGGCAAGCCCGGAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.8=50.0),PF0139113=Collagen=FE(25.8=100)
A:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=PU(0.1=0.0)
C2:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCCAGGACCCGATG
R:
CCTTTCTCCGGGCTTGCC
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: