DreEX0023158 @ danRer10
Exon Skipping
Gene
ENSDARG00000020007 | col1a2
Description
collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
Coordinates
chr19:41407213-41411965:+
Coord C1 exon
chr19:41407213-41407266
Coord A exon
chr19:41407358-41407411
Coord C2 exon
chr19:41411912-41411965
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACATTTTGCTCCACTTTTAGGGT
3' ss Score
10.21
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGCAGCCCTGGTCCTGATGGTAACAATGGTCCTGCTGGTCCTGTTGGACTTGCT
Seq A exon
GGTGCCCCTGGTGAGAAAGGAGAGCAGGGACCCTCTGGTGCTCCTGGTTTCCAG
Seq C2 exon
GGAAGCCCTGGCAATGATGGACCTCCTGGCCGTCCTGGTGCTGCTGGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020007_MULTIEX1-4/24=3-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.0=72.2),PF0139113=Collagen=FE(18.7=100)
A:
PF0139113=Collagen=FE(18.7=100)
C2:
PF0139113=Collagen=FE(24.6=100),PF0139113=Collagen=PU(10.5=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCCCTGGTCCTGAT
R:
CTTAATTCCAGCAGCACCAGGA
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]