GgaEX0028383 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23723545-23736736:+
Coord C1 exon
chr2:23723545-23723598
Coord A exon
chr2:23723688-23723741
Coord C2 exon
chr2:23736629-23736736
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTCGTTTACTTCTACCCAGGGC
3' ss Score
6.43
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTGCTCCTGGTCCTGAGGGAAACAACGGTGCTCAAGGTCCTCCTGGTGTCACT
Seq A exon
GGCAACCAAGGTGCAAAGGGTGAAACAGGTCCTGCTGGCCCTCCTGGCTTCCAG
Seq C2 exon
GGTCCTCCTGGTCCTTCTGGTCCTCCTGGTAAGGATGGTCGCAATGGTCTCCCTGGACCCATTGGCCCTGCTGGTGTACGTGGATCTCATGGTAGCCAAGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-19/39=18-39
Average complexity
C2
Mappability confidence:
94%=100=92%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(11.6=44.4),PF0139113=Collagen=FE(25.8=100)
A:
PF0139113=Collagen=FE(25.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAAACAACGGTGCTCAA
R:
TGGCTACCATGAGATCCACGT
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]