MmuEX6002798 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4469830-4470269:+
Coord C1 exon
chr6:4469830-4469928
Coord A exon
chr6:4470038-4470082
Coord C2 exon
chr6:4470171-4470269
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCTTTCTCTCACAGGGC
3' ss Score
12.77
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTGAACTTGGGCCCGTTGGTAACCCTGGCCCTGCTGGTCCTGCTGGTCCCCGTGGTGAAGTGGGTCTTCCAGGTCTTTCTGGCCCTGTTGGACCTCCT
Seq A exon
GGCAACCCTGGAACAAATGGGCTCACTGGCGCCAAGGGTGCTACT
Seq C2 exon
GGACTCCCTGGTGTCGCTGGGGCTCCCGGTCTCCCTGGCCCCCGTGGTATTCCTGGCCCCGCTGGTGCTGCTGGTGCTACAGGTGCCAGAGGACTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(2.5=6.1),PF0139113=Collagen=FE(37.2=100),PF0139113=Collagen=PU(2.0=6.1)
A:
PF0139113=Collagen=FE(16.3=100),PF0139113=Collagen=FE(14.1=100)
C2:
PF0139113=Collagen=PD(15.1=39.4),PF0139113=Collagen=FE(32.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTTCCAGGTCTTTCTG
R:
ACAAGTCCTCTGGCACCTGTA
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: