BtaEX6026251 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11638970-11639433:+
Coord C1 exon
chr4:11638970-11639068
Coord A exon
chr4:11639190-11639234
Coord C2 exon
chr4:11639335-11639433
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCTTTTCCTTACAGGGA
3' ss Score
12.49
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGTGAACTCGGACCTGTTGGTAACCCTGGCCCTGCTGGTCCCGCGGGTCCCCGTGGTGAAGTGGGTCTCCCAGGCCTTTCTGGCCCTGTCGGACCTCCT
Seq A exon
GGAAACCCCGGAGCCAATGGGCTTCCTGGCGCTAAGGGTGCTGCT
Seq C2 exon
GGCCTTCCCGGTGTTGCTGGGGCTCCCGGCCTCCCTGGACCCCGGGGTATTCCTGGCCCTGTTGGCGCTGCTGGTGCTACTGGCGCCAGAGGACTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(18.3=39.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTAACCCTGGCCCTG
R:
AACAGGGCCAGGAATACCCC
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]