GgaEX0028375 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23718388-23723741:+
Coord C1 exon
chr2:23718388-23718486
Coord A exon
chr2:23718575-23718619
Coord C2 exon
chr2:23723688-23723741
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTCTTCCTCCATAGGGC
3' ss Score
11.99
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGAAATCGGACCTGCTGGTAATGTTGGCCCTACTGGTCCTGCTGGTCCAAGAGGAGAGATTGGACTTCCTGGTTCCAGTGGTCCTGTTGGCCCTCCC
Seq A exon
GGCAACCCTGGTGCTAATGGTCTTCCTGGGGCTAAAGGTGCAGCT
Seq C2 exon
GGCAACCAAGGTGCAAAGGGTGAAACAGGTCCTGCTGGCCCTCCTGGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-9/39=8-19
Average complexity
C2
Mappability confidence:
93%=100=94%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.5=21.2),PF0139113=Collagen=FE(38.6=100)
A:
PF0139113=Collagen=FE(16.9=100),PF0139113=Collagen=PU(10.4=53.3)
C2:
PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAATCGGACCTGCTGG
R:
AGGACCTGTTTCACCCTTTGC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]