MmuEX6004167 @ mm10
Exon Skipping
Gene
ENSMUSG00000052763 | Zfp212
Description
Zinc finger protein 212 [Source:MGI Symbol;Acc:MGI:2682609]
Coordinates
chr6:47920476-47927146:+
Coord C1 exon
chr6:47920476-47920749
Coord A exon
chr6:47926507-47926896
Coord C2 exon
chr6:47927020-47927146
Length
390 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCCTCAATCCTACAGCAC
3' ss Score
8.05
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
CACACTCAATGACTGAATTTCCAGGCTGCTGTTCCCCTTCCAGGAGCACAGTGGCGCAACAGAAATACCGCGCGGTAGGAGGAGCCGCTGCCGCTCTTCTTGGGGGTGGGGAGCGCTCCCAGAATGCACCTTGTATCAACACGGCGGCGGCGGCGGCGGCGGCGGCTTCCAGGAGGGTGAGGACGTCTGGCGGAGCGGCGTACAGTTCGAGCAGTATCCCGCCAGTCGGTGTTGTGGGGCGACTGCGACCATGGCGGAGTCGACGCCTACTCGG
Seq A exon
CACAGGAGGAAACGGCGCGCCACGCCATTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCCGTACTTTCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCCGTGGAGAAGAAGATGGAATCACAGGCTGCCCGACTGCAGAGCCTGGAGGGGCGTGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAGCGGCGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGTCTGCCTCCCGGCAGCAAGGGGGAGACCCCAAAG
Seq C2 exon
GTATCTGGGTCCCTTGAGAATGATGGAGTCTGTTTCTCGGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTGTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052763-'1-10,'1-3,6-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.300 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=61.5)
C2:
PF0135222=KRAB=WD(100=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCAGGCTGCTGTTCCC
R:
TAGAGCTCCTTCTGCCAGTCC
Band lengths:
342-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types