Special

HsaEX1044880 @ hg38

Exon Skipping

Gene
ENSG00000170260 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
Coordinates
chr7:149239651-149250807:+
Coord C1 exon
chr7:149239651-149239802
Coord A exon
chr7:149250159-149250548
Coord C2 exon
chr7:149250681-149250807
Length
390 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTTTAATCCATCAGCAC
3' ss Score
4.89
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
AGAATGCACCTGGCATCAACACGGCGGCGGCGGCGGCGGCTTCCAACAGGCTCTGGGGCGCCGAGCGGACAGGAACGCAGCACGGGGGCTCCGAGGCGGGGTCTGGGTGTTGAGGGGCGACTGGAGCCATGGCGGAGTCGGCGCCTGCTCGG
Seq A exon
CACAGGAGAAAACGACGCTCCACACCTTTAACTTCTTCCACACTTCCTTCACAAGCAACAGAGAAAAGCTCCTATTTTCAGACCACCGAGATTTCACTCTGGACGGTGGTGGCCGCTATTCAGGCTGTGGAGAAGAAGATGGAGTCCCAGGCTGCCCGGCTACAGAGCCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCTGACTGCGAGAAGATGGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTATGGGCTACTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GTGTCCAGGTCACTGGAGAATGATGGCGTCTGTTTCACCGAGCAGGAATGGGAGAATCTGGAGGATTGGCAGAAGGAGCTCTACAGAAACGTGATGGAGAGTAACTATGAGACACTGGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170260-'0-11,'0-8,7-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=0.269 C2=0.104
Domain overlap (PFAM):

C1:
NO
A:
PF124173=DUF3669=WD(100=61.5)
C2:
PF0135222=KRAB=PU(94.9=86.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
([1])
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGCATCAACACGGC
R:
ACCAGTGTCTCATAGTTACTCTCCA
Band lengths:
265-655
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains