RnoEX6013438 @ rn6
Exon Skipping
Gene
ENSRNOG00000006711 | Zfp212
Description
Zinc finger protein 212 [Source:RGD Symbol;Acc:1307836]
Coordinates
chr4:77592016-77598800:+
Coord C1 exon
chr4:77592016-77592039
Coord A exon
chr4:77598160-77598549
Coord C2 exon
chr4:77598674-77598800
Length
390 bp
Sequences
Splice sites
3' ss Seq
TTGTATCCTCAATCCTACAGCAC
3' ss Score
7.37
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
ATGGCGGAGTCGACGCCTGCTCGG
Seq A exon
CACAGGAGGAAAAGGCGCTCCACACCGTTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCAGTACTTCCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCTGTGGAGAAGAAGATGGAATCCCAGGCTGCCCGACTGCAGAGCCTGGAGGGACGCGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTACTGCAGGAGTACGGCCTGCTGCAGCGACGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGACTGCCCCCAGGCAGCAAGGGGGAGACCCCAAAG
Seq C2 exon
GTGTCCGGGCCCCTTGAGAATGATGGGGTCTGTTTCTCAGAACAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTCTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006711-'0-2,'0-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.285 C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=61.5)
C2:
PF0135222=KRAB=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]