GgaEX1004757 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GLA1]
Coordinates
chr2:539156-543542:+
Coord C1 exon
chr2:539156-539179
Coord A exon
chr2:539301-539699
Coord C2 exon
chr2:543418-543542
Length
399 bp
Sequences
Splice sites
3' ss Seq
CCGTCCGTCCCCCCCCTCAGGAC
3' ss Score
10.76
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
ATGGCCGAGTGGGCCCCCGCTCAG
Seq A exon
GACCTGGAGTGGGCCATGGAGCCCCAGGAGCTGTCCCTGGAACAACCCCTGGCCGCCCCCGAGGAAGGGCCCGGCAGGGAGGCCGAGCTGCCCGCCGCCGAGATCTCGGTGACGCTGGTGACGGAGGTGCAGGCCGTGGACAGGAAGGTGGAGGCGCAGGCGGCCCAGCTGATGAACCTGGAGGGCAGGATGAGGATGGCTGAGAGCAAACTGATCGGCTGCGAGAGGACGGCCGTGGAGTTCGGCAACCAGCTGGAGAGCAAATGGACGGCCCTGGGCACCCTCATCCAGGAGTACGGGCAGCTGCAGAAGAGGCTGGAGAACATGGAGAACCTGCTGAAGAATAGGAACTTCTGGATCCTGCGCCTGCCCCCGGGGGCCAAGGGGGAAGTCCCCAAG
Seq C2 exon
ATACTGCAATTTCAAAACCTGACCTCCTGTCACGGATTGAGCAAGGAGAGGATCCCAATGCTGAGGACCAGGATGACTCTGAGGGAGGAGAAACCCCTACGGATCCCAGCACCGGTGAGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026922_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.233 C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=54.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]