Special

MmuEX0053611 @ mm9

Exon Skipping

Gene
Description
zinc finger protein 783 [Source:MGI Symbol;Acc:MGI:3040704]
Coordinates
chr6:47893170-47899018:+
Coord C1 exon
chr6:47893170-47893376
Coord A exon
chr6:47895465-47895750
Coord C2 exon
chr6:47898893-47899018
Length
286 bp
Sequences
Splice sites
3' ss Seq
CTCATACCTCTATTCCATAGAAA
3' ss Score
7.35
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
GGTAGATTAGGGCCAGCAGGGCACGTGGCTTGGGACCGTGTGGAGAGTGCGGGCGCTGGACAGCAGCTCCGGCCCCTCACCGACGCGCAGCCCGCGCCTGGGCCGACCTGTTGACTGAAAATCAGCCGGCGCTTGGCCAGATGCGTCGATGGAGGCCCGCAGCCCAGCGACGACGTGGTAGTCATGGCTGAAGCGGCGCCTGCCCCG
Seq A exon
AAATCACACTGTGGACCGTGGTGCCTGCTGTTCAGGCCTTGGAGAAGAAAAGTGGATTCTTGCCTGGCCCGCTTGCTGACTCTGGAGGGATGCTCAGGGACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAGCCAGCTGGAGGGCAAGTTGGCCGTGCTGGGGACCCTGCCTCAGGAGTCTAGGCTGCTGCATGAAGAACCTCATGGGCAACTGGAACTTCTGGGTCCAGCGGCTTCCCCCTGGCAACAAGGGGGAGGTCCCCAAG
Seq C2 exon
GTATTTCTCTGAGTCCAGAGCAGGCCCCAAGTCCAGCTAGCCCTGCCCAGGAGGAACTGAATCAAAGGCAGACACCTGAGCAGCAGCAAGAGGAAGCAACCATGATTCCACCTGAGCCAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072653_MULTIEX1-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.625 A=0.168 C2=1.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
([1])
Chicken
(galGal3)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGATTAGGGCCAGCAGGG
R:
CTTCCTCTTGCTGCTGCTCAG
Band lengths:
303-589
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types