MmuEX0053611 @ mm10
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr6:47942586-47949019:+
Coord C1 exon
chr6:47942586-47943377
Coord A exon
chr6:47945429-47945751
Coord C2 exon
chr6:47948894-47949019
Length
323 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCTTTTTCACTCCAGCCA
3' ss Score
8.31
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
ATTCCCCTTAGCGCTTCCTACTTGTTCTGAAAAACCCAAAATGGAATTTACCCTAGAAAAGGGAATCTGAACACCCTTGGGATGAGGGTGTCCCGCCCCAGCACGGAGTTCAGGGATTTCCTTAGCGTTTTCCTCACGGGCGTCTTTCTCGAATTTACCCGCCCGAAGGCTTGCCTGAGCCAGCTGCCTGCTCGCCCGGGGCCCTGGGGGTAGGGTTGACGCCGCAGGCCAGCGGCCACCGAGTGCGGGCCTTCTGGCTGCAGGGGGCGCCGTGCGCGCCGGGCCGCGGCTCCGGTAGATTAGGGCCAGCAGGGCACGTGGCTTGGGACCGTGTGGAGAGTGCGGGCGCTGGACAGCAGCTCCGGCCCCTCACCGACGCGCAGCCCGCGCCTGGGCCGACCTGTTGACTGAAAATCAGCCGGCGCTTGGCCAGATGCGTCGATGGAGGCCCGCAGCCCAGCGACGACGTGGTAGTCATGGCTGAAGCGGCGCCTGCCCCG
Seq A exon
CCAAATGCAGAGAAGAGCTCATACCTCTATTCCATAGAAATCACACTGTGGACCGTGGTGCCTGCTGTTCAGGCCTTGGAGAAGAAAAGTGGATTCTTGCCTGGCCCGCTTGCTGACTCTGGAGGGATGCTCAGGGACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAGCCAGCTGGAGGGCAAGTTGGCCGTGCTGGGGACCCTGCCTCAGGAGTCTAGGCTGCTGCATGAAGAACCTCATGGGCAACTGGAACTTCTGGGTCCAGCGGCTTCCCCCTGGCAACAAGGGGGAGGTCCCCAAG
Seq C2 exon
GTATTTCTCTGAGTCCAGAGCAGGCCCCAAGTCCAGCTAGCCCTGCCCAGGAGGAACTGAATCAAAGGCAGACACCTGAGCAGCAGCAAGAGGAAGCAACCATGATTCCACCTGAGCCAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072653_MULTIEX1-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGGTTGACGCCGCAG
R:
TGATTCAGTTCCTCCTGGGCA
Band lengths:
355-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types