HsaEX6011153 @ hg38
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149262171-149266945:+
Coord C1 exon
chr7:149262171-149262357
Coord A exon
chr7:149266335-149266730
Coord C2 exon
chr7:149266819-149266945
Length
396 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCTTGTGAGCAGGAC
3' ss Score
7.3
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
AAAGGGCCAGCGGGGCACGTGGCTCGGGACGCAGTTCGCTGCCGCCCGGCAGTAGCTCTCAGGTTAGGCGGGTCCCGCTCCGCTTCCGCCGTCGCTGCCGCGCCGCCCCGGGCCCGACAGGCCGGGTCCAGGGACTGCAACCCAGCGAGGGACGCGGGCAGCCATGGCCGAAGCGGCGCCTGCCCGG
Seq A exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GTGCCCGTGACCTTCGATGATGTGGCCGTGTATTTCTCTGAGCTGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'0-3,'0-1,6-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.174 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=60.6)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCAGTAGCTCTCAGGTTA
R:
GACCAGCGTCTCGTAGTTGC
Band lengths:
262-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains