Special

HsaEX6011153 @ hg19

Exon Skipping

Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148959262-148964036:+
Coord C1 exon
chr7:148959262-148959448
Coord A exon
chr7:148963426-148963821
Coord C2 exon
chr7:148963910-148964036
Length
396 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCTTGTGAGCAGGAC
3' ss Score
7.3
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
AAAGGGCCAGCGGGGCACGTGGCTCGGGACGCAGTTCGCTGCCGCCCGGCAGTAGCTCTCAGGTTAGGCGGGTCCCGCTCCGCTTCCGCCGTCGCTGCCGCGCCGCCCCGGGCCCGACAGGCCGGGTCCAGGGACTGCAACCCAGCGAGGGACGCGGGCAGCCATGGCCGAAGCGGCGCCTGCCCGG
Seq A exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GTGCCCGTGACCTTCGATGATGTGGCCGTGTATTTCTCTGAGCTGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=0.174 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
PF124173=DUF3669=WD(100=60.6)
C2:
PF0135222=KRAB=WD(100=95.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
([1])
Chicken
(galGal3)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCAGTAGCTCTCAGGTTA
R:
GACCAGCGTCTCGTAGTTGC
Band lengths:
262-658
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains