HsaEX6011153 @ hg19
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148959262-148964036:+
Coord C1 exon
chr7:148959262-148959448
Coord A exon
chr7:148963426-148963821
Coord C2 exon
chr7:148963910-148964036
Length
396 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCTTGTGAGCAGGAC
3' ss Score
7.3
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
AAAGGGCCAGCGGGGCACGTGGCTCGGGACGCAGTTCGCTGCCGCCCGGCAGTAGCTCTCAGGTTAGGCGGGTCCCGCTCCGCTTCCGCCGTCGCTGCCGCGCCGCCCCGGGCCCGACAGGCCGGGTCCAGGGACTGCAACCCAGCGAGGGACGCGGGCAGCCATGGCCGAAGCGGCGCCTGCCCGG
Seq A exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GTGCCCGTGACCTTCGATGATGTGGCCGTGTATTTCTCTGAGCTGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.174 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=60.6)
C2:
PF0135222=KRAB=WD(100=95.3)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCAGTAGCTCTCAGGTTA
R:
GACCAGCGTCTCGTAGTTGC
Band lengths:
262-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)